Combining species delimitation, species trees, and tests for gene flow clarifies complex speciation in scrub-jays

DA DeRaad, JE McCormack, N Chen… - Systematic …, 2022 - academic.oup.com
Complex speciation, involving rapid divergence and multiple bouts of post-divergence gene
flow, can obfuscate phylogenetic relationships and species limits. In North America, cases of …

Birds of the Caatinga revisited: The problem of enclaves within, but not of, the Caatinga

RD Lima - Journal of Arid Environments, 2021 - Elsevier
Abstract The Caatinga of northeastern Brazil is the largest nucleus of the seasonally dry
tropical forest biome. Number of bird species in lists of the Caatinga often are quite different …

Implications of headwater contact zones for the riverine barrier hypothesis: a case study of the Blue-capped Manakin (Lepidothrix coronata)

AE Moncrieff, BC Faircloth, RC Remsen, AE Hiller… - …, 2024 - academic.oup.com
Rivers frequently delimit the geographic ranges of species in the Amazon Basin. These
rivers also define the boundaries between genetic clusters within many species, yet river …

The role of rivers in the origin and future of Amazonian biodiversity

CC Ribas, AO Sawakuchi, RP de Almeida… - Nature Reviews …, 2025 - nature.com
The rich biodiversity of Amazonia is shaped geographically and ecologically by its rivers and
their cycles of seasonal flooding. Anthropogenic effects, such as deforestation, infrastructure …

Phylogeography of the Red‐Headed Manakin Supports the River‐Refuge Hypothesis

E Mikkelsen, D Lavareda, M Vallinoto… - Journal of …, 2025 - Wiley Online Library
ABSTRACT Aim The Amazon rainforest is one of the most biodiverse regions on earth, but
our understanding of the processes that have shaped its patterns of diversity remains …

Diversification processes in Gerp's mouse lemur demonstrate the importance of rivers and altitude as biogeographic barriers in Madagascar's humid rainforests

T van Elst, D Schüßler, R Rakotondravony… - Ecology and …, 2023 - Wiley Online Library
Madagascar exhibits exceptionally high levels of biodiversity and endemism. Models to
explain the diversification and distribution of species in Madagascar stress the importance of …

Subspecies‐level distribution maps for birds of the Amazon basin and adjacent areas

MA Rego, G Del‐Rio, RT Brumfield - Journal of Biogeography, 2024 - Wiley Online Library
Abstract Aim Distribution maps for Amazonian birds are often limited to species‐level
taxonomy even though many subspecies represent biological species. We provide digital …

Amazonian colonization from the Atlantic Forest: New perspectives on the connections of South American tropical forests

F Bocalini, SD Bolívar‐Leguizamón… - Molecular …, 2023 - Wiley Online Library
An open and dry vegetation belt separates Amazonia (AM) and the Atlantic Forest (AF).
Evidence from palaeoclimatic and phylogenetic studies suggests past connections between …

Geographic drivers of genetic and plumage color diversity in the blue-crowned manakin

P Paulo, FH Teófilo, C Bertuol, É Polo, AE Moncrieff… - Evolutionary …, 2023 - Springer
Investigating parallel roles of geography and environmental heterogeneity in diversification
provides insights on how neutral and selective forces drive evolution of biological systems …

Genomic architecture predicts tree topology, population structuring, and demographic history in Amazonian birds

G Thom, LR Moreira, R Batista… - Genome biology and …, 2024 - academic.oup.com
Geographic barriers are frequently invoked to explain genetic structuring across the
landscape. However, inferences on the spatial and temporal origins of population variation …