Splicing regulation by long noncoding RNAs

N Romero-Barrios, MF Legascue… - Nucleic acids …, 2018 - academic.oup.com
Massive high-throughput sequencing techniques allowed the identification of thousands of
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …

Epigenetic regulation of alternative splicing: how LncRNAs tailor the message

G Pisignano, M Ladomery - Non-coding RNA, 2021 - mdpi.com
Alternative splicing is a highly fine-tuned regulated process and one of the main drivers of
proteomic diversity across eukaryotes. The vast majority of human multi-exon genes is …

The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors

R Rigo, J Bazin, N Romero‐Barrios, M Moison… - EMBO …, 2020 - embopress.org
Alternative splicing (AS) is a major source of transcriptome diversity. Long noncoding RNA s
(lnc RNA s) have emerged as regulators of AS through different molecular mechanisms. In …

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

MT Parker, K Knop, V Zacharaki, AV Sherwood… - Elife, 2021 - elifesciences.org
Genes involved in disease resistance are some of the fastest evolving and most diverse
components of genomes. Large numbers of nucleotide-binding, leucine-rich repeat (NLR) …

Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions

WS Albihlal, I Obomighie, T Blein… - Journal of …, 2018 - academic.oup.com
Abstract In Arabidopsis thaliana, HEAT SHOCK TRANSCRIPTION FACTORA1b (HSFA1b)
controls resistance to environmental stress and is a determinant of reproductive fitness by …

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in …

L Liu, M Heidecker, T Depuydt… - Plant …, 2023 - academic.oup.com
Thousands of long intergenic noncoding RNAs (lincRNAs) have been identified in plant
genomes. While some lincRNAs have been characterized as important regulators in …

Plant long noncoding RNAs: new players in the field of post-transcriptional regulations

C Fonouni-Farde, F Ariel, M Crespi - Non-coding RNA, 2021 - mdpi.com
The first reference to the “C-value paradox” reported an apparent imbalance between
organismal genome size and morphological complexity. Since then, next-generation …

Nuclear speckle RNA binding proteins remodel alternative splicing and the non-coding Arabidopsis transcriptome to regulate a cross-talk between auxin and immune …

J Bazin, N Romero, R Rigo, C Charon, T Blein… - Frontiers in Plant …, 2018 - frontiersin.org
Nuclear speckle RNA binding proteins (NSRs) act as regulators of alternative splicing (AS)
and auxin-regulated developmental processes such as lateral root formation in Arabidopsis …

A uORF represses the transcription factor AtHB1 in aerial tissues to avoid a deleterious phenotype

PA Ribone, M Capella, AL Arce, RL Chan - Plant physiology, 2017 - academic.oup.com
Abstract AtHB1 is an Arabidopsis (Arabidopsis thaliana) homeodomain-leucine zipper
transcription factor that participates in hypocotyl elongation under short-day conditions …

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

J Audoux, N Philippe, R Chikhi, M Salson, M Gallopin… - Genome biology, 2017 - Springer
We introduce ak-mer-based computational protocol, DE-kupl, for capturing local RNA
variation in a set of RNA-seq libraries, independently of a reference genome or …