A flower is born: an update on Arabidopsis floral meristem formation

G Denay, H Chahtane, G Tichtinsky, F Parcy - Current opinion in plant …, 2017 - Elsevier
Highlights•Flower development requires de novo formation of a stem cell niche.•Auxin and
cytokinin signaling interact to trigger emergence of floral meristems.•Meristem growth and …

Modeling the epigenetic attractors landscape: toward a post-genomic mechanistic understanding of development

J Davila-Velderrain, JC Martinez-Garcia… - Frontiers in …, 2015 - frontiersin.org
Robust temporal and spatial patterns of cell types emerge in the course of normal
development in multicellular organisms. The onset of degenerative diseases may result from …

Logical modeling and analysis of cellular regulatory networks with GINsim 3.0

A Naldi, C Hernandez, W Abou-Jaoudé… - Frontiers in …, 2018 - frontiersin.org
The logical formalism is well adapted to model large cellular networks, in particular when
detailed kinetic data are scarce. This tutorial focuses on this well-established qualitative …

Role of cytokine combinations on CD4+ T cell differentiation, partial polarization, and plasticity: continuous network modeling approach

ME Martinez-Sanchez, L Huerta… - Frontiers in …, 2018 - frontiersin.org
Purpose: We put forward a theoretical and dynamical approach for the semi-quantitative
analysis of CD4+ T cell differentiation, the process by which cells with different functions are …

The MADS-box gene XAANTAL1 participates in Arabidopsis thaliana primary root growth and columella stem cell patterns in response to ROS, via direct regulation of …

E Zluhan-Martínez, CA Castañón-Suárez… - Journal of …, 2025 - academic.oup.com
The balance between cell growth, proliferation, and differentiation emerges from gene
regulatory networks coupled to various signal transduction pathways, including reactive …

Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection

TWR Harrop, I Ud Din, V Gregis, M Osnato… - The Plant …, 2016 - Wiley Online Library
In rice, inflorescence architecture is established at early stages of reproductive development
and contributes directly to grain yield potential. After induction of flowering, the complexity of …

The flowering transition pathways converge into a complex gene regulatory network that underlies the phase changes of the shoot apical meristem in Arabidopsis …

EC Chávez-Hernández, S Quiroz… - Frontiers in Plant …, 2022 - frontiersin.org
Post-embryonic plant development is characterized by a period of vegetative growth during
which a combination of intrinsic and extrinsic signals triggers the transition to the …

Gene regulatory network underlying the immortalization of epithelial cells

LF Méndez-López, J Davila-Velderrain… - BMC systems …, 2017 - Springer
Background Tumorigenic transformation of human epithelial cells in vitro has been
described experimentally as the potential result of spontaneous immortalization. This …

Plant networks as traits and hypotheses: moving beyond description

A Marshall-Colón, DJ Kliebenstein - Trends in Plant Science, 2019 - cell.com
Biology relies on the central thesis that the genes in an organism encode molecular
mechanisms that combine with stimuli and raw materials from the environment to create a …

Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates

J Davila-Velderrain, C Villarreal… - BMC systems biology, 2015 - Springer
Background Gene regulatory network (GRN) dynamical models are standard systems
biology tools for the mechanistic understanding of developmental processes and are …