SynMADE: synthetic microbiota across diverse ecosystems

TS Moon - Trends in Biotechnology, 2022 - cell.com
The past two decades have witnessed rapid advances in engineering individual microbial
strains to produce biochemicals and biomaterials. However, engineering microbial consortia …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Reducing the uncertainty in estimating soil microbial-derived carbon storage

H Hu, C Qian, K Xue, RG Jörgensen… - Proceedings of the …, 2024 - pnas.org
Soil organic carbon (SOC) is the largest carbon pool in terrestrial ecosystems and plays a
crucial role in mitigating climate change and enhancing soil productivity. Microbial-derived …

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils

L Yang, D Ning, Y Yang, N He, X Li, CR Cornell… - Soil Biology and …, 2022 - Elsevier
Microbial biodiversity is crucial for maintaining ecosystem functions. As climate change
progresses at both global and regional scales, there is a need to understand microbial …

Transferring concepts from plant to microbial ecology: a framework proposal to identify relevant bacterial functional traits

N Romillac, L Santorufo - Soil Biology and Biochemistry, 2021 - Elsevier
In the past decade, there was a growing interest in using functional trait approaches to study
soil bacterial communities. However, microbial ecology as lagged behind plant and animal …

Broader environmental adaptation of rare rather than abundant bacteria in reforestation succession soil

Z He, D Liu, Y Shi, X Wu, Y Dai, Y Shang, J Peng… - Science of the Total …, 2022 - Elsevier
Revealing the responses of rare and abundant bacteria to environmental change is crucial
for understanding microbial community assembly and ecosystem function. However, both …

Citric acid modified ultrasmall copper peroxide nanozyme for in situ remediation of environmental sulfonylurea herbicide contamination

D Yang, J Huo, Z Zhang, Z An, H Dong, Y Wang… - Journal of Hazardous …, 2023 - Elsevier
Herbicide residues in the environment threaten high-quality agriculture and human health.
Consequently, in situ remediation of herbicide contamination is vital. We synthesized a …

Linking soil bacterial community assembly with the composition of organic carbon during forest succession

Q Zhang, X Wang, Z Zhang, H Liu, Y Liu, Y Feng… - Soil Biology and …, 2022 - Elsevier
Abstract Changes in the composition of organic carbon lead to shifts in the selective
environment, which in turn contribute to changes in the composition and assembly process …

Community assembly of organisms regulates soil microbial functional potential through dual mechanisms

L Zhu, L Luan, Y Chen, X Wang, S Zhou… - Global Change …, 2024 - Wiley Online Library
Unraveling the influence of community assembly processes on soil ecosystem functioning
presents a major challenge in the field of theoretical ecology, as it has received limited …

Unveiling soil microbiome adaptation and survival strategy under vanadium stress in nationwide mining environments

H Zhang, S Jiao, Y Xing, B Jiang… - Journal of …, 2024 - Wiley Online Library
In the soils of vanadium (V) smelters, a diverse array of microorganisms relies on metabolic
activities for survival amid stress. However, the characteristics and functions of soil …