[HTML][HTML] Kinetic Monte Carlo simulations for heterogeneous catalysis: Fundamentals, current status, and challenges

M Pineda, M Stamatakis - The Journal of Chemical Physics, 2022 - pubs.aip.org
Kinetic Monte Carlo (KMC) simulations in combination with first-principles (1p)-based
calculations are rapidly becoming the gold-standard computational framework for bridging …

Assessment and optimization of the fast inertial relaxation engine (fire) for energy minimization in atomistic simulations and its implementation in lammps

J Guénolé, WG Nöhring, A Vaid, F Houllé, Z Xie… - Computational Materials …, 2020 - Elsevier
In atomistic simulations, pseudo-dynamical relaxation schemes often exhibit better
performance and accuracy in finding local minima than line-search-based descent …

A review of enhanced sampling approaches for accelerated molecular dynamics

P Tiwary, A van de Walle - Multiscale materials modeling for …, 2016 - Springer
Molecular dynamics (MD) simulations have become a tool of immense use and popularity
for simulating a variety of systems. With the advent of massively parallel computer resources …

ATK-ForceField: a new generation molecular dynamics software package

J Schneider, J Hamaekers, ST Chill… - … and Simulation in …, 2017 - iopscience.iop.org
ATK-ForceField is a software package for atomistic simulations using classical interatomic
potentials. It is implemented as a part of the Atomistix ToolKit (ATK), which is a Python …

Kinetic modelling of heterogeneous catalytic systems

M Stamatakis - Journal of Physics: Condensed Matter, 2014 - iopscience.iop.org
The importance of heterogeneous catalysis in modern life is evidenced by the fact that
numerous products and technologies routinely used nowadays involve catalysts in their …

Solid-state dimer method for calculating solid-solid phase transitions

P Xiao, D Sheppard, J Rogal… - The Journal of chemical …, 2014 - pubs.aip.org
The dimer method is a minimum mode following algorithm for finding saddle points on a
potential energy surface of atomic systems. Here, the dimer method is extended to include …

Nudged elastic band calculations accelerated with Gaussian process regression based on inverse interatomic distances

OP Koistinen, V Ásgeirsson, A Vehtari… - Journal of chemical …, 2019 - ACS Publications
Calculations of minimum energy paths for atomic rearrangements using the nudged elastic
band method can be accelerated with Gaussian process regression to reduce the number of …

Duplication, collapse, and escape of magnetic skyrmions revealed using a systematic saddle point search method

GP Müller, PF Bessarab, SM Vlasov, F Lux, NS Kiselev… - Physical review …, 2018 - APS
Various transitions that a magnetic Skyrmion can undergo are found in calculations using a
method for climbing up the energy surface and converging onto first order saddle points. In …

Atom-centered machine-learning force field package

L Li, RA Ciufo, J Lee, C Zhou, B Lin, J Cho… - Computer Physics …, 2023 - Elsevier
In recent years, machine learning algorithms have been widely used for constructing force
fields with an accuracy of ab initio methods and the efficiency of classical force fields. Here …

[HTML][HTML] Accelerated kinetic Monte Carlo: A case study; vacancy and dumbbell interstitial diffusion traps in concentrated solid solution alloys

K Ferasat, YN Osetsky, AV Barashev… - The Journal of …, 2020 - pubs.aip.org
Vacancy and self-interstitial atomic diffusion coefficients in concentrated solid solution alloys
can have a non-monotonic concentration dependence. Here, the kinetics of monovacancies …