Recent Advances in the Mechanisms and Regulation of QS in Dairy Spoilage by Pseudomonas spp.
Food spoilage is a serious issue dramatically impacting the worldwide need to counteract
food insecurity. Despite the very expensive application of low temperatures, the proper …
food insecurity. Despite the very expensive application of low temperatures, the proper …
Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
The phenotypic effects of random mutations depend on both the architecture of the genome
and the gene–trait relationships. Both levels thus play a key role in the mutational variability …
and the gene–trait relationships. Both levels thus play a key role in the mutational variability …
Evolution of genome size in asexual digital organisms
Genome sizes have evolved to vary widely, from 250 bases in viroids to 670 billion bases in
some amoebas. This remarkable variation in genome size is the outcome of complex …
some amoebas. This remarkable variation in genome size is the outcome of complex …
In silico bacteria evolve robust cooperation via complex quorum-sensing strategies
Many species of bacteria collectively sense and respond to their social and physical
environment via 'quorum sensing'(QS), a communication system controlling extracellular …
environment via 'quorum sensing'(QS), a communication system controlling extracellular …
avidaR: an R library to perform complex queries on an ontology-based database of digital organisms
R Ortega, MA Fortuna - PeerJ Computer Science, 2023 - peerj.com
Digital evolution is a branch of artificial life in which self-replicating computer programs—
digital organisms—mutate and evolve within a user-defined computational environment. In …
digital organisms—mutate and evolve within a user-defined computational environment. In …
The topology of the protein network influences the dynamics of gene order: From systems biology to a systemic understanding of evolution
Systems biology invites us to consider the dynamic interactions between the components of
a living cell. Here, by evolving artificial organisms whose genomes encode protein networks …
a living cell. Here, by evolving artificial organisms whose genomes encode protein networks …
Simultaneous optimization of weights and structure of an RBF neural network
We propose here a new evolutionary algorithm, the RBF-Gene algorithm, to optimize Radial
Basis Function Neural Networks. Unlike other works on this subject, our algorithm can …
Basis Function Neural Networks. Unlike other works on this subject, our algorithm can …
Ride the supercoiling: Evolution of supercoiling-mediated gene regulatory networks through genomic inversions
T Grohens - 2022 - theses.hal.science
DNA supercoiling, the level of over-or underwinding of the DNA molecule around itself,
plays an important role in the global regulation of gene expression in bacteria. Indeed …
plays an important role in the global regulation of gene expression in bacteria. Indeed …
X-Aevol: GPU implementation of an evolutionary experimentation simulator
L Turpin, T Gautier, J Rouzaud-Cornabas - Proceedings of the Genetic …, 2021 - dl.acm.org
X-Aevol is the GPU port of the Aevol model, a bio-inspired genetic algorithm designed to
study the evolution of micro-organisms and its effects on their genome structure. This model …
study the evolution of micro-organisms and its effects on their genome structure. This model …
Modeling evolution of regulatory networks in artificial organisms
Regulatory networks are not randomly connected. They are modular, scale‐free networks
and some motifs distribution is clearly different from random distribution. However, the …
and some motifs distribution is clearly different from random distribution. However, the …