Progress on network modeling and analysis of gut microecology: a review

M Luo, J Zhu, J Jia, H Zhang, J Zhao - Applied and Environmental …, 2024 - Am Soc Microbiol
The gut microecological network is a complex microbial community within the human body
that plays a key role in linking dietary nutrition and host physiology. To understand the …

Modulation of the gut microbiota engages antigen cross-presentation to enhance antitumor effects of CAR T cell immunotherapy

M Uribe-Herranz, S Beghi, M Ruella, K Parvathaneni… - Molecular Therapy, 2023 - cell.com
Several studies have shown the influence of commensal microbes on T cell function,
specifically in the setting of checkpoint immunotherapy for cancer. In this study, we …

Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome

M Wang, LJ Osborn, S Jain, X Meng, A Weakley, J Yan… - Cell, 2023 - cell.com
The gut microbiome is complex, raising questions about the role of individual strains in the
community. Here, we address this question by constructing variants of a complex defined …

[HTML][HTML] Controlling the human microbiome

YY Liu - Cell systems, 2023 - cell.com
We coexist with a vast number of microbes that live in and on our bodies. Those microbes
and their genes are collectively known as the human microbiome, which plays important …

Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors

A Koziol, I Odriozola, A Leonard, R Eisenhofer… - Mbio, 2023 - Am Soc Microbiol
The ability of the gut microbiome has been posited as an additional axis of animals'
phenotypic plasticity. However, whether and how such plasticity varies across hosts with …

Murine gut microbiome meta-analysis reveals alterations in carbohydrate metabolism in response to aging

X You, UC Dadwal, ME Lenburg, MA Kacena… - …, 2022 - Am Soc Microbiol
Compositional and functional alterations to the gut microbiota during aging are
hypothesized to potentially impact our health. Thus, determining aging-specific gut …

The Microbial and Metabolic Signatures of Patients with Stable Coronary Artery Disease

J Zhong, D Wu, Y Zeng, G Wu, N Zheng… - Microbiology …, 2022 - Am Soc Microbiol
Growing evidence indicates an association between gut dysbiosis and coronary artery
disease (CAD). However, the underlying mechanisms relevant to stable CAD (SCAD) …

Metabolites with SARS-CoV-2 inhibitory activity identified from human microbiome commensals

FJ Piscotta, HH Hoffmann, YJ Choi, GI Small… - Msphere, 2021 - Am Soc Microbiol
The COVID-19 pandemic has highlighted the need to identify additional antiviral small
molecules to complement existing therapies. Although increasing evidence suggests that …

Metagenomic sequencing reveals that the assembly of functional genes and taxa varied highly and lacked redundancy in the earthworm gut compared with soil under …

R Xia, Y Shi, X Wang, Y Wu, M Sun, F Hu - Msystems, 2022 - Am Soc Microbiol
Exploring the ecological mechanism of microbial community assembly in soil and the
earthworm gut in a vanadium polluted environment could help us understand the effects of …

Gut dysbiosis narrative in psoriasis: matched-pair approach identifies only subtle shifts correlated with elevated fecal calprotectin

B Yunusbayev, A Bogdanova… - Microbiology …, 2025 - journals.asm.org
Many studies have reported gut microbiome alterations in psoriasis patients, suggesting
dysbiosis. While evidence for dysbiosis and its link to pathogenesis remains inconclusive …