Protein folding intermediates and pathways studied by hydrogen exchange

SW Englander - Annual review of biophysics and biomolecular …, 2000 - annualreviews.org
▪ Abstract In order to solve the immensely difficult protein-folding problem, it will be
necessary to characterize the barriers that slow folding and the intermediate structures that …

How cooperative are protein folding and unfolding transitions?

P Malhotra, JB Udgaonkar - Protein Science, 2016 - Wiley Online Library
A thermodynamically and kinetically simple picture of protein folding envisages only two
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …

Hydrogen exchange in peptides and proteins using NMR spectroscopy

CE Dempsey - Progress in Nuclear Magnetic Resonance …, 2001 - Elsevier
Analysis of the kinetics of hydrogen exchange in biological macromolecules is a powerful
method for studying both their structural and dynamic properties. This arises from our …

Protein conformational stabilities can be determined from hydrogen exchange rates

BMP Huyghues-Despointes, JM Scholtz… - nature structural …, 1999 - nature.com
Measuring protein conformational stability is one key to solving the protein folding problem.
The conformational stability is the free energy change of the unfolding reaction, F↔ U, under …

Protein hydrogen exchange mechanism: local fluctuations

H Maity, WK Lim, JN Rumbley, SW Englander - Protein science, 2003 - Wiley Online Library
Experiments were done to study the dynamic structural motions that determine protein
hydrogen exchange (HX) behavior. The replacement of a solvent‐exposed lysine residue …

An amino acid code for protein folding

J Rumbley, L Hoang, L Mayne… - Proceedings of the …, 2001 - National Acad Sciences
Direct structural information obtained for many proteins supports the following conclusions.
The amino acid sequences of proteins can stabilize not only the final native state but also a …

Cytochrome c folding pathway: Kinetic native-state hydrogen exchange

L Hoang, S Bédard, MMG Krishna… - Proceedings of the …, 2002 - National Acad Sciences
Native-state hydrogen exchange experiments under EX1 conditions can distinguish partially
unfolded intermediates by their formation rates and identify the amide hydrogens exposed …

The energetics of T4 lysozyme reveal a hierarchy of conformations

M Llinás, B Gillespie, FW Dahlquist… - Nature structural …, 1999 - nature.com
We have used native state exchange to examine the energy landscape of the well-
characterized protein T4 lysozyme. Although the protein exhibits two-state behavior by …

Measuring the conformational stability of a protein by hydrogen exchange

BMP Huyghues-Despointes, CN Pace… - … Structure, Stability, and …, 2001 - Springer
Measuring the conformational stability of a protein is one key to solving the protein folding
problem. It is also of practical importance for answering questions such as these: 1. How …

Protein structure prediction using residue-resolved protection factors from hydrogen-deuterium exchange NMR

TT Nguyen, DR Marzolf, JT Seffernick, S Heinze… - Structure, 2022 - cell.com
Hydrogen-deuterium exchange (HDX) measured by nuclear magnetic resonance (NMR)
provides structural information for proteins relating to solvent accessibility and flexibility …