genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

PG Meirmans - Molecular Ecology Resources, 2020 - Wiley Online Library
Abstract genodive version 3.0 is a user‐friendly program for the analysis of population
genetic data. This version presents a major update from the previous version and now offers …

The value of long-term ecological research for evolutionary insights

JM Cocciardi, AM Hoffman… - Nature Ecology & …, 2024 - nature.com
Scientists must have an integrative understanding of ecology and evolution across spatial
and temporal scales to predict how species will respond to global change. Although …

Variant calling in polyploids for population and quantitative genetics

AR Phillips - Applications in Plant Sciences, 2024 - Wiley Online Library
Advancements in genome assembly and sequencing technology have made whole genome
sequence (WGS) data and reference genomes accessible to study polyploid species …

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)

MK Brandrud, J Baar, MT Lorenzo… - Systematic …, 2020 - academic.oup.com
Disentangling phylogenetic relationships proves challenging for groups that have evolved
recently, especially if there is ongoing reticulation. Although they are in most cases …

Structure is more robust than other clustering methods in simulated mixed-ploidy populations

M Stift, F Kolář, PG Meirmans - Heredity, 2019 - nature.com
Abstract Analysis of population genetic structure has become a standard approach in
population genetics. In polyploid complexes, clustering analyses can elucidate the origin of …

Phylogenomic relationships and evolution of polyploid Salix species revealed by RAD sequencing data

ND Wagner, L He, E Hörandl - Frontiers in Plant Science, 2020 - frontiersin.org
Polyploidy is common in the genus Salix. However, little is known about the origin,
parentage and genomic composition of polyploid species because of a lack of suitable …

[HTML][HTML] Evidence for two main domestication trajectories in Saccharomyces cerevisiae linked to distinct bread-making processes

F Bigey, D Segond, A Friedrich, S Guezenec… - Current Biology, 2021 - cell.com
Production of leavened bread dates to the second millennium BCE. Since then, the art of
bread making has developed, yet the evolution of bread-associated microbial species …

Model‐based genotype and ancestry estimation for potential hybrids with mixed‐ploidy

V Shastry, PE Adams, D Lindtke… - Molecular ecology …, 2021 - Wiley Online Library
Non‐random mating among individuals can lead to spatial clustering of genetically similar
individuals and population stratification. This deviation from panmixia is commonly observed …

Genome-wide genotyping elucidates the geographical diversification and dispersal of the polyploid and clonally propagated yam (Dioscorea alata)

BM Sharif, C Burgarella, F Cormier, P Mournet… - Annals of …, 2020 - academic.oup.com
Abstract Background and Aims Inferring the diffusion history of many human-dispersed
species is still not straightforward due to unresolved past human migrations. The centre of …

Divergent mechanisms of reduced growth performance in Betula ermanii saplings from high-altitude and low-latitude range edges

T Aihara, K Araki, Y Onuma, Y Cai, AMM Paing, S Goto… - Heredity, 2023 - nature.com
The reduced growth performance of individuals from range edges is a common
phenomenon in various taxa, and considered to be an evolutionary factor that limits the …