Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy

SH Gohil, JB Iorgulescu, DA Braun, DB Keskin… - Nature Reviews …, 2021 - nature.com
Advances in molecular biology, microfluidics and bioinformatics have empowered the study
of thousands or even millions of individual cells from malignant tumours at the single-cell …

Single-cell profiling of myeloid cells in glioblastoma across species and disease stage reveals macrophage competition and specialization

AR Pombo Antunes, I Scheyltjens, F Lodi… - Nature …, 2021 - nature.com
Glioblastomas are aggressive primary brain cancers that recur as therapy-resistant tumors.
Myeloid cells control glioblastoma malignancy, but their dynamics during disease …

Next-generation pathology using multiplexed immunohistochemistry: mapping tissue architecture at single-cell level

FM Bosisio, Y Van Herck, J Messiaen… - Frontiers in …, 2022 - frontiersin.org
Single-cell omics aim at charting the different types and properties of all cells in the human
body in health and disease. Over the past years, myriads of cellular phenotypes have been …

A framework for multiplex imaging optimization and reproducible analysis

J Eng, E Bucher, Z Hu, T Zheng, SL Gibbs… - Communications …, 2022 - nature.com
Multiplex imaging technologies are increasingly used for single-cell phenotyping and spatial
characterization of tissues; however, transparent methods are needed for comparing the …

Age‐related remodelling of the blood immunological portrait and the local tumor immune response in patients with luminal breast cancer

L Berben, G Floris, C Kenis, B Dalmasso… - Clinical & …, 2020 - Wiley Online Library
Objectives Aging is associated with altered immune function and chronic low‐grade
inflammation, referred to as immunosenescence. As breast cancer is an age‐related …

In-depth characterization of the tumor microenvironment in central nervous system lymphoma reveals implications for immune-checkpoint therapy

L Marcelis, A Antoranz, AM Delsupehe… - Cancer Immunology …, 2020 - Springer
Primary central nervous system lymphoma (PCNSL) is a rare type of non-Hodgkin
lymphoma with an aggressive clinical course. To investigate the potential of immune …

Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing

FM Bosisio, A Antoranz, Y van Herck, MM Bolognesi… - Elife, 2020 - elifesciences.org
In melanoma, the lymphocytic infiltrate is a prognostic parameter classified morphologically
into 'brisk','non-brisk'and 'absent'entailing a functional association that has never been …

Evaluating microglial phenotypes using single-cell technologies

R Sankowski, G Monaco, M Prinz - Trends in neurosciences, 2022 - cell.com
Recent single-cell technologies have enabled researchers to simultaneously assess the
transcriptomes and other modalities of thousands of cells within their spatial context. Here …

Next-generation pathology by multiplexed immunohistochemistry

F De Smet, AA Martinez, FM Bosisio - Trends in Biochemical Sciences, 2021 - cell.com
For decades, pathologists have visually inspected tissue slides stained by H&E and simple,
one marker at a time immunohistochemistry (IHC). Novel technologies are now allowing …