Bayesian statistics and modelling

R van de Schoot, S Depaoli, R King, B Kramer… - Nature Reviews …, 2021 - nature.com
Bayesian statistics is an approach to data analysis based on Bayes' theorem, where
available knowledge about parameters in a statistical model is updated with the information …

Genetic prediction of complex traits with polygenic scores: a statistical review

Y Ma, X Zhou - Trends in Genetics, 2021 - cell.com
Accurate genetic prediction of complex traits can facilitate disease screening, improve early
intervention, and aid in the development of personalized medicine. Genetic prediction of …

Polygenic prediction via Bayesian regression and continuous shrinkage priors

T Ge, CY Chen, Y Ni, YCA Feng, JW Smoller - Nature communications, 2019 - nature.com
Polygenic risk scores (PRS) have shown promise in predicting human complex traits and
diseases. Here, we present PRS-CS, a polygenic prediction method that infers posterior …

Sparsity information and regularization in the horseshoe and other shrinkage priors

J Piironen, A Vehtari - 2017 - projecteuclid.org
The horseshoe prior has proven to be a noteworthy alternative for sparse Bayesian
estimation, but has previously suffered from two problems. First, there has been no …

The spike-and-slab lasso

V Ročková, EI George - Journal of the American Statistical …, 2018 - Taylor & Francis
Despite the wide adoption of spike-and-slab methodology for Bayesian variable selection,
its potential for penalized likelihood estimation has largely been overlooked. In this article …

A simple sampler for the horseshoe estimator

E Makalic, DF Schmidt - IEEE Signal Processing Letters, 2015 - ieeexplore.ieee.org
In this note we derive a simple Bayesian sampler for linear regression with the horseshoe
hierarchy. A new interpretation of the horseshoe model is presented, and extensions to …

Shrinkage priors for Bayesian penalized regression

S Van Erp, DL Oberski, J Mulder - Journal of Mathematical Psychology, 2019 - Elsevier
In linear regression problems with many predictors, penalized regression techniques are
often used to guard against overfitting and to select variables relevant for predicting an …

On the half-Cauchy prior for a global scale parameter

NG Polson, JG Scott - Bayesian Analysis, 2012 - projecteuclid.org
This paper argues that the half-Cauchy distribution should replace the inverse-Gamma
distribution as a default prior for a top-level scale parameter in Bayesian hierarchical …

Dirichlet–Laplace priors for optimal shrinkage

A Bhattacharya, D Pati, NS Pillai… - Journal of the American …, 2015 - Taylor & Francis
Penalized regression methods, such as L 1 regularization, are routinely used in high-
dimensional applications, and there is a rich literature on optimality properties under sparsity …

[HTML][HTML] Generalized double Pareto shrinkage

A Armagan, DB Dunson, J Lee - Statistica Sinica, 2013 - ncbi.nlm.nih.gov
We propose a generalized double Pareto prior for Bayesian shrinkage estimation and
inferences in linear models. The prior can be obtained via a scale mixture of Laplace or …