BlobToolKit–interactive quality assessment of genome assemblies

R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …

[HTML][HTML] Wolbachia endosymbionts and human disease control

BE Slatko, AN Luck, SL Dobson, JM Foster - Molecular and biochemical …, 2014 - Elsevier
Most human filarial nematode parasites and arthropods are hosts for a bacterial
endosymbiont, Wolbachia. In filaria, Wolbachia are required for normal development, fertility …

A road map for molecular ecology

RL Andrew, L Bernatchez, A Bonin… - Molecular …, 2013 - Wiley Online Library
The discipline of molecular ecology has undergone enormous changes since the journal
bearing its name was launched approximately two decades ago. The field has seen great …

Comparative genomics of the major parasitic worms

Nature genetics, 2019 - nature.com
Parasitic nematodes (roundworms) and platyhelminths (flatworms) cause debilitating
chronic infections of humans and animals, decimate crop production and are a major …

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

G Koutsovoulos, S Kumar… - Proceedings of the …, 2016 - National Acad Sciences
Tardigrades are meiofaunal ecdysozoans that are key to understanding the origins of
Arthropoda. Many species of Tardigrada can survive extreme conditions through …

Metagenomic insights into communities, functions of endophytes and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots

BY Tian, Y Cao, KQ Zhang - Scientific reports, 2015 - nature.com
Endophytes are known to play important roles in plant's health and productivity. In this study,
we investigated the root microbiome of tomato in association with infection by root knot …

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

S Kumar, M Jones, G Koutsovoulos, M Clarke… - Frontiers in …, 2013 - frontiersin.org
Generating the raw data for a de novo genome assembly project for a target eukaryotic
species is relatively easy. This democratization of access to large-scale data has allowed …

Phylogenomic analysis of Wolbachia genomes from the Darwin Tree of Life biodiversity genomics project

E Vancaester, M Blaxter - PLoS Biology, 2023 - journals.plos.org
The Darwin Tree of Life (DToL) project aims to sequence all described terrestrial and
aquatic eukaryotic species found in Britain and Ireland. Reference genome sequences are …

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

S Eves-van Den Akker, DR Laetsch, P Thorpe… - Genome biology, 2016 - Springer
Background The yellow potato cyst nematode, Globodera rostochiensis, is a devastating
plant pathogen of global economic importance. This biotrophic parasite secretes effectors …

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

EM Schwarz, PK Korhonen, BE Campbell, ND Young… - Genome biology, 2013 - Springer
Background The barber's pole worm, Haemonchus contortus, is one of the most
economically important parasites of small ruminants worldwide. Although this parasite can …