[HTML][HTML] The biogenesis of the immunopeptidome

A Admon - Seminars in Immunology, 2023 - Elsevier
The immunopeptidome is the repertoire of peptides bound and presented by the MHC class
I, class II, and non-classical molecules. The peptides are produced by the degradation of …

What can ribo-seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?

JR Prensner, JG Abelin, LW Kok, KR Clauser… - Molecular & Cellular …, 2023 - ASBMB
Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …

The SysteMHC Atlas v2. 0, an updated resource for mass spectrometry-based immunopeptidomics

X Huang, Z Gan, H Cui, T Lan, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The SysteMHC Atlas v1. 0 was the first public repository dedicated to mass
spectrometry-based immunopeptidomics. Here we introduce a newly released version of the …

Origins, Technological Advancement, and Applications of Peptidomics

M Schrader - Peptidomics: Methods and Strategies, 2024 - Springer
Peptidomics is the comprehensive characterization of peptides from biological sources
instead of heading for a few single peptides in former peptide research. Mass spectrometry …

[HTML][HTML] The HLA-II immunopeptidome of SARS-CoV-2

S Weingarten-Gabbay, DY Chen, S Sarkizova… - Cell reports, 2024 - cell.com
Targeted synthetic vaccines have the potential to transform our response to viral outbreaks,
yet the design of these vaccines requires a comprehensive knowledge of viral immunogens …

Expanding the MAPPs assay to accommodate MHC-II Pan Receptors for improved predictability of potential T cell epitopes

K Hartman, G Steiner, M Siegel, CM Looney… - Biology, 2023 - mdpi.com
Simple Summary The major histocompatibility complex class II-associated peptide
proteomics assay is widely used during preclinical immunogenicity risk assessments to …

Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry

KM Phulphagar, C Ctortecka, ASV Jacome… - Molecular & Cellular …, 2023 - ASBMB
Comprehensive and in-depth identification of the human leukocyte antigen class I (HLA-I)
and class II (HLA-II) tumor immunopeptidome can inform the development of cancer …

A journey to your self: The vague definition of immune self and its practical implications

B Koncz, GM Balogh… - Proceedings of the …, 2024 - National Acad Sciences
The identification of immunogenic peptides has become essential in an increasing number
of fields in immunology, ranging from tumor immunotherapy to vaccine development. The …

[HTML][HTML] A Primer on Proteomic Characterization of Intercellular Communication in a Virus Microenvironment

JC Kostas, CS Brainard, IM Cristea - Molecular & Cellular Proteomics, 2025 - Elsevier
Intercellular communication is fundamental to multicellular life and a core determinant of
outcomes during viral infection, where the common goals of virus and host for persistence …

Time-resolved scRNA-seq reveals transcription dynamics of polarized macrophages with influenza A virus infection and antigen presentation to T cells

J Yu, C Shang, X Deng, J Jia, X Shang… - Emerging Microbes & …, 2024 - Taylor & Francis
Throughout history, the influenza A virus has caused numerous devastating global
pandemics. Macrophages, as pivotal innate immune cells, exhibit a wide range of immune …