Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

C Barcenilla, JF Cobo-Díaz, F De Filippis… - Nature …, 2024 - nature.com
Deep investigation of the microbiome of food-production and food-processing environments
through whole-metagenome sequencing (WMS) can provide detailed information on the …

Antibiotic residues and antibiotic resistance genes in African water systems: Implications for safe drinking water, aquatic ecosystems, and Sustainable Development …

ES Okeke, CEI Nwankwo, TPC Ezeorba… - Journal of Water …, 2025 - Elsevier
The overuse of antimicrobial compounds, over the years, has caused an accumulation of
antibiotic residues (AR) in African waters. The use of antibiotics grew substantially from 2000 …

Investigation of the Microbiome of Industrial PDO Sfela Cheese and Its Artisanal Variants Using 16S rDNA Amplicon Sequencing and Shotgun Metagenomics

N Tsouggou, A Slavko, O Tsipidou, A Georgoulis… - Foods, 2024 - mdpi.com
Sfela is a white brined Greek cheese of protected designation of origin (PDO) produced in
the Peloponnese region from ovine, caprine milk, or a mixture of the two. Despite the PDO …

[HTML][HTML] Illumina Sequencing in Conjunction with Propidium Monoazide to Identify Live Bacteria After Antiseptic Treatment in a Complex Oral Biofilm: A Study Using an …

MC Sánchez, P Hernández, Á Velapatiño, E Cuba… - Antibiotics, 2024 - mdpi.com
Background/Objectives: The evaluation of the efficacy of antibacterial treatments in complex
oral ecosystems is limited by the inability to differentiate live from dead bacteria using omic …

Characterizing living ocular bacterial communities and the effects of antibiotic perturbation in house finches

CL Weitzman, DM Hawley, B Rostama… - …, 2024 - Wiley Online Library
DNA‐based methods to measure the abundance and relative abundance of bacterial taxa
can be skewed by the presence of dead or transient bacteria. Consequently, the active …

A Shotgun Metagenomics Investigation into Labeling Inaccuracies in Widely Sold Probiotic Supplements in the USA

A Gundogdu, G Karis, A Killpartrick… - Molecular Nutrition & …, 2024 - Wiley Online Library
While probiotics are generally considered safe, concerns persist regarding the accuracy of
labels on these supplements and their potential contribution to the spread of antibiotic …

Microbial and chemical stability of lumpfish (Cyclopterus lumpus) roe during refrigerated storage in acid-salt brines with or without antioxidants

HA Jensen, LG Plaza, RH Houmann… - Frontiers in Food …, 2024 - frontiersin.org
Immediately after the harvest of lumpfish (Cyclopterus lumpus) roe in artic regions, a
common practice is to preserve the fresh roe in brine to produce a salted intermediate …

Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

C Barcenilla Canduela, JF Cobo Díaz, F De Filippis… - Nature … - buleria.unileon.es
[EN] Deep investigation of the microbiome of food-production and foodprocessing
environments through whole-metagenome sequencing (WMS) can provide detailed …

Microbiome-based analytical approaches and biopreservation agents for improving meat quality and safety

C Barcenilla Canduela - 2024 - buleria.unileon.es
[EN] Meat and meat processing environments can host a wide range of microorganisms.
They can be found all along the processing lines, in raw materials, final products, food …