Viruses in soil ecosystems: an unknown quantity within an unexplored territory

KE Williamson, JJ Fuhrmann… - Annual review of …, 2017 - annualreviews.org
Viral abundance in soils can range from below detection limits in hot deserts to over 1 billion
per gram in wetlands. Abundance appears to be strongly influenced by water availability …

Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions

Y Kuzyakov, K Mason-Jones - Soil Biology and Biochemistry, 2018 - Elsevier
Viruses are ubiquitous in nature and have various ecological functions. Despite their very
high abundance (up to 10 10 g− 1), viruses in soil remain disregarded with just a few, mostly …

Characterization of crAss-like phage isolates highlights Crassvirales genetic heterogeneity and worldwide distribution

MD Ramos-Barbero, C Gómez-Gómez… - Nature …, 2023 - nature.com
Crassvirales (crAss-like phages) are an abundant group of human gut-specific
bacteriophages discovered in silico. The use of crAss-like phages as human fecal indicators …

The 'neglected'soil virome–potential role and impact

AA Pratama, JD Van Elsas - Trends in Microbiology, 2018 - cell.com
Bacteriophages are among the most abundant and diverse biological units in the biosphere.
They have contributed to our understanding of the central dogma of biology and have been …

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

AA Pratama, B Bolduc, AA Zayed, ZP Zhong, J Guo… - PeerJ, 2021 - peerj.com
Background Viruses influence global patterns of microbial diversity and nutrient cycles.
Though viral metagenomics (viromics), specifically targeting dsDNA viruses, has been …

Virus–host interactions and their roles in coral reef health and disease

RV Thurber, JP Payet, AR Thurber… - Nature Reviews …, 2017 - nature.com
Coral reefs occur in nutrient-poor shallow waters, constitute biodiversity and productivity
hotspots, and are threatened by anthropogenic disturbance. This Review provides an …

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses

M Parras-Moltó, A Rodríguez-Galet… - Microbiome, 2018 - Springer
Background Viruses are key players regulating microbial ecosystems. Exploration of viral
assemblages is now possible thanks to the development of metagenomics, the most …

Metagenomic approaches to assess bacteriophages in various environmental niches

S Hayes, J Mahony, A Nauta, D Van Sinderen - Viruses, 2017 - mdpi.com
Bacteriophages are ubiquitous and numerous parasites of bacteria and play a critical
evolutionary role in virtually every ecosystem, yet our understanding of the extent of the …

[HTML][HTML] Iroki: automatic customization and visualization of phylogenetic trees

RM Moore, AO Harrison, SM McAllister, SW Polson… - PeerJ, 2020 - peerj.com
Phylogenetic trees are an important analytical tool for evaluating community diversity and
evolutionary history. In the case of microorganisms, the decreasing cost of sequencing has …

Symbiosis: viruses as intimate partners

MJ Roossinck, ER Bazán - Annual Review of Virology, 2017 - annualreviews.org
Viruses must establish an intimate relationship with their hosts and vectors in order to infect,
replicate, and disseminate; hence, viruses can be considered as symbionts with their hosts …