Incremental value of metagenomic next generation sequencing for the diagnosis of suspected focal infection in adults

HC Zhang, JW Ai, P Cui, YM Zhu, W Hong-Long, YJ Li… - Journal of Infection, 2019 - Elsevier
Objectives Microbiological diagnosis is essential during clinical management of focal
infections. Metagenomic next generation sequencing (mNGS) has been reported as a …

Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis

J Cheng, H Hu, Y Kang, W Chen, W Fang… - Annals of clinical …, 2018 - Springer
Background Pathogens identification is critical for the proper diagnosis and precise
treatment of infective endocarditis (IE). Although blood and valve cultures are the gold …

Detection of pediatric bacterial meningitis pathogens from cerebrospinal fluid by next-generation sequencing technology

L Guo, Y Li, L Liu, H Wu, J Zhou, Y Zhang… - Journal of …, 2019 - journalofinfection.com
We read with interest a recent article in this journal that the predominant pathogen shift to
CV-A6 might contribute to the abnormal growth of Hand, foot, and mouth disease (HFMD) …

Microbiological diagnosis of endophthalmitis using nanopore targeted sequencing

Q Huang, A Fu, Y Wang, J Zhang… - Clinical & …, 2021 - Wiley Online Library
Background Microorganism identification is critical for the early diagnosis and management
of infectious endophthalmitis, but traditional culture can yield false‐negative results …

Evaluation of the diagnostic performance of mNGS in detecting intra-abdominal infections of the emergency department patients

L Zheng, Z Kang, R Wang, M Lv, Z Gao… - Infection and Drug …, 2023 - Taylor & Francis
Purpose Intra-abdominal infections (IAI) are gradually becoming common in the emergency
department, though the incidence is low and the prognosis is fair, as the symptoms are …

cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs

I Tolstoganov, A Bankevich, Z Chen… - Bioinformatics, 2019 - academic.oup.com
Motivation The recently developed barcoding-based synthetic long read (SLR) technologies
have already found many applications in genome assembly and analysis. However …

The advantages of next-generation sequencing technology in the detection of different sources of abscess.

LY Guo, WY Feng, X Guo, B Liu, G Liu… - The Journal of …, 2018 - europepmc.org
A comment on this article appears in" Failure of metagenomics in detecting emerging
pathogens, the Clostridium difficile paradigm." J Infect. 2019 May; 78 (5): 409-421. A …

Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing

L Quan, R Dong, W Yang, L Chen, J Lang, J Liu… - Scientific reports, 2019 - nature.com
Human papillomavirus (HPV) is a major pathogen that causes cervical cancer and many
other related diseases. HPV infection related cervical microbiome could be an induce factor …

Metagenomic diagnosis for a culture-negative sample from a patient with severe pneumonia by nanopore and next-generation sequencing

K Wang, P Li, Y Lin, H Chen, L Yang, J Li… - Frontiers in Cellular …, 2020 - frontiersin.org
Rapid and accurate etiologic diagnosis accelerates targeted antimicrobial therapy.
Metagenomic analysis has played a critical role in pathogen identification. In this study, we …

Evaluation of next-generation sequencing for the pathogenic diagnosis of children brain abscesses

H Hu, L Guo, H Wu, W Feng, T Chen, G Liu - Journal of Infection, 2019 - Elsevier
In this study, we applied metagenomic next-generation sequencing (mNGS) to detect the
causative pathogens in brain abscess samples from 4 pediatric patients. NGS could offer …