Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

A review of molecular representation in the age of machine learning

DS Wigh, JM Goodman… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Research in chemistry increasingly requires interdisciplinary work prompted by, among
other things, advances in computing, machine learning, and artificial intelligence. Everyone …

Structure-based drug design with equivariant diffusion models

A Schneuing, C Harris, Y Du, K Didi… - Nature Computational …, 2024 - nature.com
Abstract Structure-based drug design (SBDD) aims to design small-molecule ligands that
bind with high affinity and specificity to pre-determined protein targets. Generative SBDD …

Equivariant 3D-conditional diffusion model for molecular linker design

I Igashov, H Stärk, C Vignac, A Schneuing… - Nature Machine …, 2024 - nature.com
Fragment-based drug discovery has been an effective paradigm in early-stage drug
development. An open challenge in this area is designing linkers between disconnected …

Motif-based graph self-supervised learning for molecular property prediction

Z Zhang, Q Liu, H Wang, C Lu… - Advances in Neural …, 2021 - proceedings.neurips.cc
Predicting molecular properties with data-driven methods has drawn much attention in
recent years. Particularly, Graph Neural Networks (GNNs) have demonstrated remarkable …

Learning substructure invariance for out-of-distribution molecular representations

N Yang, K Zeng, Q Wu, X Jia… - Advances in Neural …, 2022 - proceedings.neurips.cc
Molecule representation learning (MRL) has been extensively studied and current methods
have shown promising power for various tasks, eg, molecular property prediction and target …

[HTML][HTML] New avenues in artificial-intelligence-assisted drug discovery

C Cerchia, A Lavecchia - Drug Discovery Today, 2023 - Elsevier
Over the past decade, the amount of biomedical data available has grown at unprecedented
rates. Increased automation technology and larger data volumes have encouraged the use …

Advancing drug discovery via artificial intelligence

HCS Chan, H Shan, T Dahoun, H Vogel… - Trends in pharmacological …, 2019 - cell.com
Drug discovery and development are among the most important translational science
activities that contribute to human health and wellbeing. However, the development of a new …

GuacaMol: benchmarking models for de novo molecular design

N Brown, M Fiscato, MHS Segler… - Journal of chemical …, 2019 - ACS Publications
De novo design seeks to generate molecules with required property profiles by virtual
design-make-test cycles. With the emergence of deep learning and neural generative …

Generative models for de novo drug design

X Tong, X Liu, X Tan, X Li, J Jiang, Z Xiong… - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models
have received much attention in recent years. Inspired by these successes, researchers are …