The promise and the challenges of cryo‐electron tomography

M Turk, W Baumeister - FEBS letters, 2020 - Wiley Online Library
Structural biologists have traditionally approached cellular complexity in a reductionist
manner in which the cellular molecular components are fractionated and purified before …

Cryo-electron tomography and subtomogram averaging

W Wan, JAG Briggs - Methods in enzymology, 2016 - Elsevier
Cryo-electron tomography (cryo-ET) allows 3D volumes to be reconstructed from a set of 2D
projection images of a tilted biological sample. It allows densities to be resolved in 3D that …

Visualizing the molecular sociology at the HeLa cell nuclear periphery

J Mahamid, S Pfeffer, M Schaffer, E Villa, R Danev… - Science, 2016 - science.org
The molecular organization of eukaryotic nuclear volumes remains largely unexplored. Here
we combined recent developments in cryo–electron tomography (cryo-ET) to produce three …

mTORC1 controls phase separation and the biophysical properties of the cytoplasm by tuning crowding

M Delarue, GP Brittingham, S Pfeffer, IV Surovtsev… - Cell, 2018 - cell.com
Macromolecular crowding has a profound impact on reaction rates and the physical
properties of the cell interior, but the mechanisms that regulate crowding are poorly …

TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining

G Rice, T Wagner, M Stabrin, O Sitsel, D Prumbaum… - Nature …, 2023 - nature.com
Cryogenic-electron tomography enables the visualization of cellular environments in
extreme detail, however, tools to analyze the full amount of information contained within …

A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue

M Schaffer, S Pfeffer, J Mahamid, S Kleindiek… - Nature …, 2019 - nature.com
Cryo-focused ion beam milling of frozen-hydrated cells has recently provided
unprecedented insights into the inner space of cells. In combination with cryo-electron …

Convolutional neural networks for automated annotation of cellular cryo-electron tomograms

M Chen, W Dai, SY Sun, D Jonasch, CY He… - Nature …, 2017 - nature.com
Cellular electron cryotomography offers researchers the ability to observe macromolecules
frozen in action in situ, but a primary challenge with this technique is identifying molecular …

emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging

BA Himes, P Zhang - Nature methods, 2018 - nature.com
Macromolecular complexes are intrinsically flexible and often challenging to purify for
structure determination by single-particle cryo-electron microscopy (cryo-EM). Such …

A complete data processing workflow for cryo-ET and subtomogram averaging

M Chen, JM Bell, X Shi, SY Sun, Z Wang, SJ Ludtke - Nature methods, 2019 - nature.com
Electron cryotomography is currently the only method capable of visualizing cells in three
dimensions at nanometer resolutions. While modern instruments produce massive amounts …

Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography

BD Engel, M Schaffer, L Kuhn Cuellar, E Villa… - elife, 2015 - elifesciences.org
Chloroplast function is orchestrated by the organelle's intricate architecture. By combining
cryo-focused ion beam milling of vitreous Chlamydomonas cells with cryo-electron …