The molecular basis of phenotypic variation in yeast

JC Fay - Current opinion in genetics & development, 2013 - Elsevier
The power of yeast genetics has now been extensively applied to phenotypic variation
among strains of Saccharomyces cerevisiae. As a result, over 100 genes and numerous …

Design of synthetic yeast promoters via tuning of nucleosome architecture

KA Curran, NC Crook, AS Karim, A Gupta… - Nature …, 2014 - nature.com
Abstract Model-based design of biological parts is a critical goal of synthetic biology,
especially for eukaryotes. Here we demonstrate that nucleosome architecture can have a …

Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species

XC Li, JC Fay - Genome biology and evolution, 2017 - academic.oup.com
Gene regulation is a ubiquitous mechanism by which organisms respond to their
environment. While organisms are often found to be adapted to the environments they …

Evolution of cis-regulatory elements in yeast de novo and duplicated new genes

ZTY Tsai, HK Tsai, JH Cheng, CH Lin, YF Tsai, D Wang - BMC genomics, 2012 - Springer
Background New genes that originate from non-coding DNA rather than being duplicated
from parent genes are called de novo genes. Their short evolution time and lack of parent …

An analysis and prediction of nucleosome positioning based on information content

Y Xing, G Liu, X Zhao, L Cai - Chromosome research, 2013 - Springer
Nucleosome positioning plays a key role in the regulation of many biological processes. In
this study, the statistical difference of information content was investigated in nucleosome …

Identifying cooperative transcription factors in yeast using multiple data sources

FJ Lai, MH Jhu, CC Chiu, YM Huang, WS Wu - BMC systems biology, 2014 - Springer
Background Transcriptional regulation of gene expression is usually accomplished by
multiple interactive transcription factors (TFs). Therefore, it is crucial to understand the …

Fitness landscape for nucleosome positioning

D Weghorn, M Lässig - Proceedings of the National …, 2013 - National Acad Sciences
Histone–DNA complexes, so-called nucleosomes, are the building blocks of DNA packaging
in eukaryotic cells. The histone-binding affinity of a local DNA segment depends on its …

Genome Duplication Increases Meiotic Recombination Frequency: A Saccharomyces cerevisiae Model

O Fang, L Wang, Y Zhang, J Yang, Q Tao… - Molecular biology …, 2021 - academic.oup.com
Genetic recombination characterized by reciprocal exchange of genes on paired
homologous chromosomes is the most prominent event in meiosis of almost all sexually …

Epigenetic Mismatches with Mutated Transcribing Genes at Leukemogenic S-Phase Binding/Start Sites–Potential Targets for Therapy with Enzyme Inhibitors

G Prindull - Current Stem Cell Research & Therapy, 2012 - ingentaconnect.com
This review focuses on gene transcription patterns of leukemogenic S-phases in mitotic cell
cycles for identification of enzymatic reactions as potential targets for epigenetics-based …

Novel approaches for metabolic engineering of yeast at multiple scales

NC Crook - 2014 - repositories.lib.utexas.edu
Living systems contain enormous potential to solve many pressing engineering problems,
including the production of usable energy, the synthesis and degradation of a variety of …