Deep Generative Models in De Novo Drug Molecule Generation

C Pang, J Qiao, X Zeng, Q Zou… - Journal of Chemical …, 2023 - ACS Publications
The discovery of new drugs has important implications for human health. Traditional
methods for drug discovery rely on experiments to optimize the structure of lead molecules …

Fake it until you make it? generative de novo design and virtual screening of synthesizable molecules

M Stanley, M Segler - Current Opinion in Structural Biology, 2023 - Elsevier
Computational techniques, including virtual screening, de novo design, and generative
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …

Molecule generation for target protein binding with structural motifs

Z Zhang, Y Min, S Zheng, Q Liu - The Eleventh International …, 2023 - openreview.net
Designing ligand molecules that bind to specific protein binding sites is a fundamental
problem in structure-based drug design. Although deep generative models and geometric …

3D molecular generative framework for interaction-guided drug design

W Zhung, H Kim, WY Kim - Nature Communications, 2024 - nature.com
Deep generative modeling has a strong potential to accelerate drug design. However,
existing generative models often face challenges in generalization due to limited data …

Inverse mapping of quantum properties to structures for chemical space of small organic molecules

A Fallani, L Medrano Sandonas… - Nature …, 2024 - nature.com
Computer-driven molecular design combines the principles of chemistry, physics, and
artificial intelligence to identify chemical compounds with tailored properties. While quantum …

Gotta be SAFE: a new framework for molecular design

E Noutahi, C Gabellini, M Craig, JSC Lim, P Tossou - Digital Discovery, 2024 - pubs.rsc.org
Traditional molecular string representations, such as SMILES, often pose challenges for AI-
driven molecular design due to their non-sequential depiction of molecular substructures. To …

ClickGen: Directed exploration of synthesizable chemical space via modular reactions and reinforcement learning

M Wang, S Li, J Wang, O Zhang, H Du, D Jiang… - Nature …, 2024 - nature.com
Despite the significant potential of generative models, low synthesizability of many
generated molecules limits their real-world applications. In response to this issue, we …

Generative flows on synthetic pathway for drug design

S Seo, M Kim, T Shen, M Ester, J Park, S Ahn… - arXiv preprint arXiv …, 2024 - arxiv.org
Generative models in drug discovery have recently gained attention as efficient alternatives
to brute-force virtual screening. However, most existing models do not account for …

Data-driven discovery of molecular photoswitches with multioutput Gaussian processes

RR Griffiths, JL Greenfield, AR Thawani… - Chemical …, 2022 - pubs.rsc.org
Photoswitchable molecules display two or more isomeric forms that may be accessed using
light. Separating the electronic absorption bands of these isomers is key to selectively …

It Takes Two to Tango: Directly Optimizing for Constrained Synthesizability in Generative Molecular Design

J Guo, P Schwaller - arXiv preprint arXiv:2410.11527, 2024 - arxiv.org
Constrained synthesizability is an unaddressed challenge in generative molecular design.
In particular, designing molecules satisfying multi-parameter optimization objectives, while …