[图书][B] Gibbs measures in biology and physics: The Potts model

UA Rozikov - 2022 - World Scientific
In this chapter we give main definitions and useful facts of the theory of Gibbs measures of
lattice spin systems. In the first section we give general definitions. This chapter also …

On the renormalization group fixed point of the two-dimensional Ising model at criticality

A Stottmeister, TJ Osborne - Scientific Reports, 2023 - nature.com
We analyze the renormalization group fixed point of the two-dimensional Ising model at
criticality. In contrast with expectations from tensor network renormalization (TNR), we show …

[HTML][HTML] GIN: A web-application for constructing synthetic datasets of interconnected networks in bioinformatics

P Cinaglia - SoftwareX, 2024 - Elsevier
Networks are crucial in structuring biological systems in terms of interactions, to investigate
the related properties and dynamics. Network analysis plays a relevant role in knowledge …

A review of mathematical and computational methods in cancer dynamics

A Uthamacumaran, H Zenil - Frontiers in oncology, 2022 - frontiersin.org
Cancers are complex adaptive diseases regulated by the nonlinear feedback systems
between genetic instabilities, environmental signals, cellular protein flows, and gene …

Mean-field theory of superradiant phase transition in complex networks

AY Bazhenov, DV Tsarev, AP Alodjants - Physical Review E, 2021 - APS
In this work we consider a superradiant phase transition problem for the Dicke-Ising model,
which generalizes the Dicke and Ising models for annealed complex networks presuming …

PCA-based synthetic sensitivity coefficients for chemical reaction network in cancer

G Biddau, G Caviglia, M Piana, S Sommariva - Scientific Reports, 2024 - nature.com
Chemical reaction networks are powerful tools for modeling cell signaling and its disruptions
in diseases like cancer. Realistic chemical reaction networks involve hundreds of proteins …

Stability of imbalanced triangles in gene regulatory networks of cancerous and normal cells

AK Rizi, M Zamani, A Shirazi, GR Jafari… - Frontiers in …, 2021 - frontiersin.org
Genes communicate with each other through different regulatory effects, which lead to the
emergence of complex network structures in cells, and such structures are expected to be …

Critical transitions in degree mixed networks: A discovery of forbidden tipping regions in networked spin systems

D Reisinger, R Adam, ML Kogler, M Füllsack, G Jäger - PloS one, 2022 - journals.plos.org
Critical transitions can be conceptualized as abrupt shifts in the state of a system typically
induced by changes in the system's critical parameter. They have been observed in a variety …

SSI: A Statistical Sensitivity Index for Chemical Reaction Networks in cancer

G Biddau, G Caviglia, M Piana, S Sommariva - bioRxiv, 2023 - biorxiv.org
At the cellular level, cancer is triggered by mutations of the proteins involved in signalling
networks made of hundreds of reacting species. The corresponding mathematical model …

Thermodynamic Fidelity of Generative Models for Ising System

BH Lee, K Nykiel, AE Hallberg, B Rider… - arXiv preprint arXiv …, 2024 - arxiv.org
Machine learning has become a central technique for modeling in science and engineering,
either complementing or as surrogates to physics-based models. Significant efforts have …