As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …

Research software is a fundamental and vital part of research, yet significant challenges to
discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the …

Trajectory inference approaches analyze genome-wide omics data from thousands of single
cells and computationally infer the order of these cells along developmental trajectories …

The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility,
interoperability and reusability of digital research objects for both humans and machines …

Free and open source software (FOSS) is any computer program released under a licence
that grants users rights to run the program for any purpose, to study it, to modify it, and to …

Automated experiments can accelerate research and development.'Flexible
automation'enables the cost-and time-effective design, construction and reconfiguration of …

We develop a new large-scale hydrological and water resources model, the Community
Water Model (CWatM), which can simulate hydrology both globally and regionally at …

Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of
chromatin by allowing Hi-C data processing, analysis and visualization. With the Galaxy …

This article presents a study on the quality and execution of research code from publicly-
available replication datasets at the Harvard Dataverse repository. Research code is …

BornAgain is a free and open-source multi-platform software framework for simulating and
fitting X-ray and neutron reflectometry, off-specular scattering, and grazing-incidence small …