[PDF][PDF] The CCP4 suite: integrative software for macromolecular crystallography

J Agirre, M Atanasova, H Bagdonas… - … Section D: Structural …, 2023 - journals.iucr.org
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …

A comprehensive review on genomics, systems biology and structural biology approaches for combating antimicrobial resistance in ESKAPE pathogens …

P Priyamvada, R Debroy, A Anbarasu… - World Journal of …, 2022 - Springer
In recent decades, antimicrobial resistance has been augmented as a global concern to
public health owing to the global spread of multidrug-resistant strains from different ESKAPE …

Structures and mechanism of the plant PIN-FORMED auxin transporter

KL Ung, M Winkler, L Schulz, M Kolb, DP Janacek… - Nature, 2022 - nature.com
Auxins are hormones that have central roles and control nearly all aspects of growth and
development in plants,–. The proteins in the PIN-FORMED (PIN) family (also known as the …

Integrating model simulation tools and cryo‐electron microscopy

JG Beton, T Cragnolini, M Kaleel… - Wiley …, 2023 - Wiley Online Library
The power of computer simulations, including machine‐learning, has become an
inseparable part of scientific analysis of biological data. This has significantly impacted the …

Posttranslational modification of microtubules by the MATCAP detyrosinase

L Landskron, J Bak, A Adamopoulos, K Kaplani… - Science, 2022 - science.org
The detyrosination-tyrosination cycle involves the removal and religation of the C-terminal
tyrosine of α-tubulin and is implicated in cognitive, cardiac, and mitotic defects. The …

Antiemetic effects of sclareol, possibly through 5-HT3 and D2 receptor interaction pathways: in-vivo and in-silico studies

MH Bappi, AAS Prottay, K Al-Khafaji, MS Akbor… - Food and Chemical …, 2023 - Elsevier
Background Emesis is a complex physiological phenomenon that serves as a defense
against numerous toxins, stressful situations, adverse medication responses, chemotherapy …

Optimization and theoretical analysis of lipase-catalyzed enzymatic esterification of glycerol for efficient glycerides synthesis

PG de Sousa Junior, AG do Nascimento Camara… - Biochemical …, 2023 - Elsevier
Eversa® Transform 2.0 is a lipase derived from Thermomyces lanuginosus produced by a
genetically modified microorganism. It has a low production cost, high substrate specificity …

Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family

TF Custódio, PA Paulsen, KM Frain… - Life science …, 2021 - life-science-alliance.org
The human glucose transporters GLUT1 and GLUT3 have a central role in glucose uptake
as canonical members of the Sugar Porter (SP) family. GLUT1 and GLUT3 share a fully …

Conformational changes in the Niemann–Pick type C1 protein NCR1 drive sterol translocation

KM Frain, E Dedic, L Nel, A Bohush… - Proceedings of the …, 2024 - National Acad Sciences
The membrane protein Niemann–Pick type C1 (NPC1, named NCR1 in yeast) is central to
sterol homeostasis in eukaryotes. Saccharomyces cerevisiae NCR1 is localized to the …

Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality

GCP van Zundert, NW Moriarty, OV Sobolev… - Structure, 2021 - cell.com
With the advent of the resolution revolution in cryoelectron microscopy (cryo-EM), low-
resolution refinement is common, and likewise increases the need for a reliable force field …