Combining machine learning and computational chemistry for predictive insights into chemical systems

JA Keith, V Vassilev-Galindo, B Cheng… - Chemical …, 2021 - ACS Publications
Machine learning models are poised to make a transformative impact on chemical sciences
by dramatically accelerating computational algorithms and amplifying insights available from …

Machine-learning-guided directed evolution for protein engineering

KK Yang, Z Wu, FH Arnold - Nature methods, 2019 - nature.com
Protein engineering through machine-learning-guided directed evolution enables the
optimization of protein functions. Machine-learning approaches predict how sequence maps …

Accurate global machine learning force fields for molecules with hundreds of atoms

S Chmiela, V Vassilev-Galindo, OT Unke… - Science …, 2023 - science.org
Global machine learning force fields, with the capacity to capture collective interactions in
molecular systems, now scale up to a few dozen atoms due to considerable growth of model …

[图书][B] Surrogates: Gaussian process modeling, design, and optimization for the applied sciences

RB Gramacy - 2020 - taylorfrancis.com
Computer simulation experiments are essential to modern scientific discovery, whether that
be in physics, chemistry, biology, epidemiology, ecology, engineering, etc. Surrogates are …

When Gaussian process meets big data: A review of scalable GPs

H Liu, YS Ong, X Shen, J Cai - IEEE transactions on neural …, 2020 - ieeexplore.ieee.org
The vast quantity of information brought by big data as well as the evolving computer
hardware encourages success stories in the machine learning community. In the …

An optimization-centric view on Bayes' rule: Reviewing and generalizing variational inference

J Knoblauch, J Jewson, T Damoulas - Journal of Machine Learning …, 2022 - jmlr.org
We advocate an optimization-centric view of Bayesian inference. Our inspiration is the
representation of Bayes' rule as infinite-dimensional optimization (Csisz´ r, 1975; Donsker …

Data‐Driven Design for Metamaterials and Multiscale Systems: A Review

D Lee, W Chen, L Wang, YC Chan… - Advanced …, 2024 - Wiley Online Library
Metamaterials are artificial materials designed to exhibit effective material parameters that
go beyond those found in nature. Composed of unit cells with rich designability that are …

A survey on high-dimensional Gaussian process modeling with application to Bayesian optimization

M Binois, N Wycoff - ACM Transactions on Evolutionary Learning and …, 2022 - dl.acm.org
Bayesian Optimization (BO), the application of Bayesian function approximation to finding
optima of expensive functions, has exploded in popularity in recent years. In particular, much …

Efficiently sampling functions from Gaussian process posteriors

J Wilson, V Borovitskiy, A Terenin… - International …, 2020 - proceedings.mlr.press
Gaussian processes are the gold standard for many real-world modeling problems,
especially in cases where a model's success hinges upon its ability to faithfully represent …

Kernel methods through the roof: handling billions of points efficiently

G Meanti, L Carratino, L Rosasco… - Advances in Neural …, 2020 - proceedings.neurips.cc
Kernel methods provide an elegant and principled approach to nonparametric learning, but
so far could hardly be used in large scale problems, since naïve implementations scale …