Recent advances in isobaric labeling and applications in quantitative proteomics

MK Sivanich, TJ Gu, DN Tabang, L Li - Proteomics, 2022 - Wiley Online Library
Mass spectrometry (MS) has emerged at the forefront of quantitative proteomic techniques.
Liquid chromatography‐mass spectrometry (LC‐MS) can be used to determine abundances …

Increasing the throughput of sensitive proteomics by plexDIA

J Derks, A Leduc, G Wallmann, RG Huffman… - Nature …, 2023 - nature.com
Current mass spectrometry methods enable high-throughput proteomics of large sample
amounts, but proteomics of low sample amounts remains limited in depth and throughput. To …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

In-depth site-specific analysis of N-glycoproteome in human cerebrospinal fluid and glycosylation landscape changes in Alzheimer's disease

Z Chen, Q Yu, Q Yu, J Johnson, R Shipman… - Molecular & Cellular …, 2021 - ASBMB
As the body fluid that directly interchanges with the extracellular fluid of the central nervous
system (CNS), cerebrospinal fluid (CSF) serves as a rich source for CNS-related disease …

Strategies for increasing the depth and throughput of protein analysis by plexDIA

J Derks, N Slavov - Journal of proteome research, 2023 - ACS Publications
Accurate protein quantification is key to identifying protein markers, regulatory relationships
between proteins, and pathophysiological mechanisms. Realizing this potential requires …

Enhanced multiplexing technology for proteomics

BL Bowser, RAS Robinson - Annual Review of Analytical …, 2023 - annualreviews.org
The identification of thousands of proteins and their relative levels of expression has
furthered understanding of biological processes and disease and stimulated new systems …

Chemical isotope labeling for quantitative proteomics

X Tian, HP Permentier, R Bischoff - Mass spectrometry reviews, 2023 - Wiley Online Library
Advancements in liquid chromatography and mass spectrometry over the last decades have
led to a significant development in mass spectrometry‐based proteome quantification …

Advances in stable isotope labeling: dynamic labeling for spatial and temporal proteomic analysis

NC Beller, AB Hummon - Molecular omics, 2022 - pubs.rsc.org
The field of proteomics is continually improving, requiring the development of new
quantitative methods. Stable isotope labeling in cell culture (SILAC) is a metabolic labeling …

6-Plex mdSUGAR Isobaric-Labeling Guide Fingerprint Embedding for Glycomics Analysis

M Ma, M Li, Y Zhu, Y Zhao, F Wu, Z Wang… - Analytical …, 2023 - ACS Publications
Glycans are vital biomolecules with diverse functions in biological processes. Mass
spectrometry (MS) has become the most widely employed technology for glycomics studies …

Recent advances in mass spectrometry analysis of neuropeptides

A Phetsanthad, NQ Vu, Q Yu… - Mass spectrometry …, 2023 - Wiley Online Library
Due to their involvement in numerous biochemical pathways, neuropeptides have been the
focus of many recent research studies. Unfortunately, classic analytical methods, such as …