Targeting RNA with small molecules: from fundamental principles towards the clinic

JP Falese, A Donlic, AE Hargrove - Chemical Society Reviews, 2021 - pubs.rsc.org
Recent advances in our understanding of RNA biology have uncovered crucial roles for
RNA in multiple disease states, ranging from viral and bacterial infections to cancer and …

RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental …

SK Burley, C Bhikadiya, C Bi, S Bittrich… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), the US data center for the global PDB archive and a founding member of the …

Structure of the bacterial ribosome at 2 Å resolution

ZL Watson, FR Ward, R Méheust, O Ad, A Schepartz… - elife, 2020 - elifesciences.org
Using cryo-electron microscopy (cryo-EM), we determined the structure of the Escherichia
coli 70S ribosome with a global resolution of 2.0 Å. The maps reveal unambiguous …

[HTML][HTML] RELION: implementation of a Bayesian approach to cryo-EM structure determination

SHW Scheres - Journal of structural biology, 2012 - Elsevier
RELION, for REgularized LIkelihood OptimizatioN, is an open-source computer program for
the refinement of macromolecular structures by single-particle analysis of electron cryo …

Ribosome-targeting antibiotics and mechanisms of bacterial resistance

DN Wilson - Nature Reviews Microbiology, 2014 - nature.com
The ribosome is one of the main antibiotic targets in the bacterial cell. Crystal structures of
naturally produced antibiotics and their semi-synthetic derivatives bound to ribosomal …

Structure of the human 80S ribosome

H Khatter, AG Myasnikov, SK Natchiar, BP Klaholz - Nature, 2015 - nature.com
Ribosomes are translational machineries that catalyse protein synthesis. Ribosome
structures from various species are known at the atomic level, but obtaining the structure of …

The scanning mechanism of eukaryotic translation initiation

AG Hinnebusch - Annual review of biochemistry, 2014 - annualreviews.org
In eukaryotes, the translation initiation codon is generally identified by the scanning
mechanism, wherein every triplet in the messenger RNA leader is inspected for …

[HTML][HTML] Regulation of translation initiation in eukaryotes: mechanisms and biological targets

N Sonenberg, AG Hinnebusch - Cell, 2009 - cell.com
Translational control in eukaryotic cells is critical for gene regulation during nutrient
deprivation and stress, development and differentiation, nervous system function, aging, and …

The mechanism of eukaryotic translation initiation: new insights and challenges

AG Hinnebusch, JR Lorsch - Cold Spring Harbor …, 2012 - cshperspectives.cshlp.org
Translation initiation in eukaryotes is a highly regulated and complex stage of gene
expression. It requires the action of at least 12 initiation factors, many of which are known to …