A review of cell-based computational modeling in cancer biology

J Metzcar, Y Wang, R Heiland… - JCO clinical cancer …, 2019 - ascopubs.org
Cancer biology involves complex, dynamic interactions between cancer cells and their
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …

Physical models of collective cell motility: from cell to tissue

BA Camley, WJ Rappel - Journal of physics D: Applied physics, 2017 - iopscience.iop.org
In this article, we review physics-based models of collective cell motility. We discuss a range
of techniques at different scales, ranging from models that represent cells as simple self …

[图书][B] Mathematical modeling of biological pattern formation

A Deutsch, S Dormann - 2005 - Springer
In this chapter we have presented mathematical modeling approaches to biological pattern
formation. While reaction-diffusion models are appropriate to describe the spatio-temporal …

Material approaches to active tissue mechanics

W Xi, TB Saw, D Delacour, CT Lim… - Nature Reviews Materials, 2019 - nature.com
Communities of epithelial cells communicate through intercellular interactions, allowing
them to coordinate their motility, which plays a key role in homeostasis, morphogenesis and …

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling

G Letort, A Montagud, G Stoll, R Heiland… - …, 2019 - academic.oup.com
Motivation Due to the complexity and heterogeneity of multicellular biological systems,
mathematical models that take into account cell signalling, cell population behaviour and the …

Viscoelasticity acts as a marker for tumor extracellular matrix characteristics

CT Mierke - Frontiers in Cell and Developmental Biology, 2021 - frontiersin.org
Biological materials such as extracellular matrix scaffolds, cancer cells, and tissues are often
assumed to respond elastically for simplicity; the viscoelastic response is quite commonly …

Calibrating agent-based models to tumor images using representation learning

CG Cess, SD Finley - PLoS Computational Biology, 2023 - journals.plos.org
Agent-based models (ABMs) have enabled great advances in the study of tumor
development and therapeutic response, allowing researchers to explore the spatiotemporal …

Computational approaches to modelling and optimizing cancer treatment

TO McDonald, YC Cheng, C Graser, PB Nicol… - Nature Reviews …, 2023 - nature.com
Computational models can be applied to optimize treatment schedules and model treatment
responses in cancer therapy. In this Review, we provide an overview of such computational …

Vangl2 promotes the formation of long cytonemes to enable distant Wnt/β-catenin signaling

L Brunt, G Greicius, S Rogers, BD Evans… - Nature …, 2021 - nature.com
Wnt signaling regulates cell proliferation and cell differentiation as well as migration and
polarity during development. However, it is still unclear how the Wnt ligand distribution is …

Extracellular matrix density regulates the formation of tumour spheroids through cell migration

IG Gonçalves, JM Garcia-Aznar - PLoS computational biology, 2021 - journals.plos.org
In this work, we show how the mechanical properties of the cellular microenvironment
modulate the growth of tumour spheroids. Based on the composition of the extracellular …