Plant enhancers: a call for discovery
Higher eukaryotes typically contain many different cell types, displaying different cellular
functions that are influenced by biotic and abiotic cues. The different functions are …
functions that are influenced by biotic and abiotic cues. The different functions are …
Comparative analysis of gene regulatory networks: from network reconstruction to evolution
D Thompson, A Regev, S Roy - Annual review of cell and …, 2015 - annualreviews.org
Regulation of gene expression is central to many biological processes. Although
reconstruction of regulatory circuits from genomic data alone is therefore desirable, this …
reconstruction of regulatory circuits from genomic data alone is therefore desirable, this …
RFECS: a random-forest based algorithm for enhancer identification from chromatin state
Transcriptional enhancers play critical roles in regulation of gene expression, but their
identification in the eukaryotic genome has been challenging. Recently, it was shown that …
identification in the eukaryotic genome has been challenging. Recently, it was shown that …
[PDF][PDF] Plant Cis-regulatory elements: methods of identification and applications.
Biotic and abiotic factors badly affect the productivity and growth of plants and found the
major yield-limiting factor in agriculture. In recent years, various cis-regulatory elements …
major yield-limiting factor in agriculture. In recent years, various cis-regulatory elements …
Detection of regulatory SNPs in human genome using ChIP-seq ENCODE data
LO Bryzgalov, EV Antontseva, MY Matveeva… - PLoS one, 2013 - journals.plos.org
A vast amount of SNPs derived from genome-wide association studies are represented by
non-coding ones, therefore exacerbating the need for effective identification of regulatory …
non-coding ones, therefore exacerbating the need for effective identification of regulatory …
Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice
Plant disease resistance that is durable and effective against diverse pathogens (broad-
spectrum) is essential to stabilize crop production. Such resistance is frequently controlled …
spectrum) is essential to stabilize crop production. Such resistance is frequently controlled …
Celiac disease associated SNP rs17810546 is located in a gene silencing region
A Zwiers, RLJ van Wanrooij, T Dieckman, P Nijeboer… - Gene, 2020 - Elsevier
GWAS studies have identified variant rs 17810546 in a non-coding region on chromosome 3
as a risk factor for several auto-immune diseases, including Celiac Disease. In silico …
as a risk factor for several auto-immune diseases, including Celiac Disease. In silico …
Unravelling the hidden DNA structural/physical code provides novel insights on promoter location
Although protein recognition of DNA motifs in promoter regions has been traditionally
considered as a critical regulatory element in transcription, the location of promoters, and in …
considered as a critical regulatory element in transcription, the location of promoters, and in …
High resolution mapping of enhancer-promoter interactions
RNA Polymerase II ChIA-PET data has revealed enhancers that are active in a profiled cell
type and the genes that the enhancers regulate through chromatin interactions. The most …
type and the genes that the enhancers regulate through chromatin interactions. The most …
'In silico'analysis of putative transcription factor binding sites in differentially expressed genes: Study of the turnover of TFBSs under salt stress responsiveness in …
G Sanchita, BM Baby, A Sharma - Plant Omics, 2013 - search.informit.org
The binding of transcription factors in transcription factor binding sites (TFBSs) play a key
role in the regulation of different biological processes showing change in the expression of …
role in the regulation of different biological processes showing change in the expression of …