Epistasis and adaptation on fitness landscapes

C Bank - Annual Review of Ecology, Evolution, and Systematics, 2022 - annualreviews.org
Epistasis occurs when the effect of a mutation depends on its carrier's genetic background.
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …

Population genomics of intrapatient HIV-1 evolution

F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert… - Elife, 2015 - elifesciences.org
Many microbial populations rapidly adapt to changing environments with multiple variants
competing for survival. To quantify such complex evolutionary dynamics in vivo, time …

Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model

J Neidhart, IG Szendro, J Krug - Genetics, 2014 - academic.oup.com
Much of the current theory of adaptation is based on Gillespie's mutational landscape model
(MLM), which assumes that the fitness values of genotypes linked by single mutational steps …

ComGA‐RelA interaction and persistence in the Bacillus subtilis K‐state

J Hahn, AW Tanner, VJ Carabetta… - Molecular …, 2015 - Wiley Online Library
The bistably expressed K‐state of B acillus subtilis is characterized by two distinct features;
transformability and arrested growth when K‐state cells are exposed to fresh medium. The …

Sex in a test tube: testing the benefits of in vitro recombination

D Pesce, N Lehman… - … Transactions of the …, 2016 - royalsocietypublishing.org
The origin and evolution of sex, and the associated role of recombination, present a major
problem in biology. Sex typically involves recombination of closely related DNA or RNA …

Universality classes of interaction structures for NK fitness landscapes

S Hwang, B Schmiegelt, L Ferretti, J Krug - Journal of Statistical Physics, 2018 - Springer
Kauffman's NK-model is a paradigmatic example of a class of stochastic models of genotypic
fitness landscapes that aim to capture generic features of epistatic interactions in multilocus …

Rapid adaptation of recombining populations on tunable fitness landscapes

J Li, A Amado, C Bank - Molecular ecology, 2024 - Wiley Online Library
How does standing genetic variation affect polygenic adaptation in recombining
populations? Despite a large body of work in quantitative genetics, epistatic and weak …

Fitness Trade-Offs in Competence Differentiation of Bacillus subtilis

M Yüksel, JJ Power, J Ribbe, T Volkmann… - Frontiers in …, 2016 - frontiersin.org
In the stationary phase, Bacillus subtilis differentiates stochastically and transiently into the
state of competence for transformation (K-state). The latter is associated with growth arrest …

An evolving genetic architecture interacts with Hill–Robertson interference to determine the benefit of sex

AOB Whitlock, KM Peck, RBR Azevedo, CL Burch - Genetics, 2016 - academic.oup.com
Sex is ubiquitous in the natural world, but the nature of its benefits remains controversial.
Previous studies have suggested that a major advantage of sex is its ability to eliminate …

A numerical model supports the evolutionary advantage of recombination plasticity in shifting environments

SR Rybnikov, S Hübner, AB Korol - The American Naturalist, 2024 - journals.uchicago.edu
Numerous empirical studies have witnessed an increase in meiotic recombination rate in
response to physiological stress imposed by unfavorable environmental conditions. Thus …