Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future

D Akhoundova, MA Rubin - Cancer Cell, 2022 - cell.com
Next-generation DNA sequencing technology has dramatically advanced clinical oncology
through the identification of therapeutic targets and molecular biomarkers, leading to the …

Cell-Free DNA fragmentomics: the novel promising biomarker

T Qi, M Pan, H Shi, L Wang, Y Bai, Q Ge - International Journal of …, 2023 - mdpi.com
Cell-free DNA molecules are released into the plasma via apoptotic or necrotic events and
active release mechanisms, which carry the genetic and epigenetic information of its origin …

[HTML][HTML] Modeling fragmentation probability of land-use and land-cover using the bagging, random forest and random subspace in the Teesta River Basin …

S Talukdar, KU Eibek, S Akhter, SK Ziaul… - Ecological …, 2021 - Elsevier
Land-use and land-cover (LULC) changes have become a crucial issue that urgently needs
to be addressed due to global environmental change. Many studies have employed remote …

Analysis of recurrently protected genomic regions in cell-free DNA found in urine

H Markus, J Zhao, T Contente-Cuomo… - Science translational …, 2021 - science.org
Cell-free DNA (cfDNA) in urine is a promising analyte for noninvasive diagnostics. However,
urine cfDNA is highly fragmented. Whether characteristics of these fragments reflect …

Next-generation liquid biopsies: embracing data science in oncology

YR Im, DWY Tsui, LA Diaz, JCM Wan - Trends in cancer, 2021 - cell.com
Deeper and broader sequencing of circulating tumor DNA (ctDNA) has identified a wealth of
cancer markers in the circulation, resulting in a paradigm shift towards data science-driven …

FinaleDB: a browser and database of cell-free DNA fragmentation patterns

H Zheng, MS Zhu, Y Liu - Bioinformatics, 2021 - academic.oup.com
Circulating cell-free DNA (cfDNA) is a promising biomarker for the diagnosis and prognosis
of many diseases, including cancer. The genome-wide non-random fragmentation patterns …

Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics

X Peng, HD Li, FX Wu, J Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Advances in sequencing technologies facilitate personalized disease-risk profiling and
clinical diagnosis. In recent years, some great progress has been made in noninvasive …

Emerging tests for noninvasive colorectal cancer screening

M Hanna, N Dey, WM Grady - Clinical Gastroenterology and Hepatology, 2023 - Elsevier
Colorectal cancer (CRC) is among the most common cancers globally and a major cause of
cancer-related deaths. The American Cancer Society estimates that CRC will kill 1 in 60 …

[HTML][HTML] Longitudinal cell-free DNA characterization by low-coverage whole-genome sequencing in patients undergoing high-dose radiotherapy

Z Balázs, P Balermpas, I Ivanković, J Willmann… - Radiotherapy and …, 2024 - Elsevier
Abstract Background and Purpose Current radiotherapy guidelines rely heavily on imaging-
based monitoring. Liquid biopsy monitoring promises to complement imaging by providing …

[图书][B] Multi-feature ensemble learning on cell-free dna for accurately detecting and locating cancer

ML Stackpole - 2020 - search.proquest.com
Early cancer detection and localization using cell-free DNA (cfDNA) faces multiple
challenges, including the low fraction of tumor DNA in cfDNA and the molecular …