Crop breeding for a changing climate: Integrating phenomics and genomics with bioinformatics

JI Marsh, H Hu, M Gill, J Batley, D Edwards - Theoretical and Applied …, 2021 - Springer
Key message Safeguarding crop yields in a changing climate requires bioinformatics
advances in harnessing data from vast phenomics and genomics datasets to translate …

Database resources of the national genomics data center, China national center for bioinformation in 2023

Nucleic acids research, 2023 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global academic …

Efficient and multiplex gene upregulation in plants through CRISPR-Cas-mediated knockin of enhancers

Q Yao, R Shen, Y Shao, Y Tian, P Han, X Zhang… - Molecular plant, 2024 - cell.com
Gene upregulation through genome editing is important for plant research and breeding.
Targeted insertion of short transcriptional enhancers (STEs) into gene promoters may offer a …

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …

Genomics and transcriptomics to protect rice (Oryza sativa. L.) from abiotic stressors: -pathways to achieving zero hunger

M Ahmad - Frontiers in Plant Science, 2022 - frontiersin.org
More over half of the world's population depends on rice as a major food crop. Rice (Oryza
sativa L.) is vulnerable to abiotic challenges including drought, cold, and salinity since it …

Genome Variation Map: a worldwide collection of genome variations across multiple species

C Li, D Tian, B Tang, X Liu, X Teng, W Zhao… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Genome Variation Map (GVM; http://bigd. big. ac. cn/gvm/) is a public data
repository of genome variations. It aims to collect and integrate genome variations for a wide …

MDSi: Multi-omics Database for Setaria italica

X Li, S Hou, M Feng, R Xia, J Li, S Tang, Y Han, J Gao… - BMC Plant …, 2023 - Springer
Abstract Background Foxtail millet (Setaria italica) harbors the small diploid genome (~ 450
Mb) and shows the high inbreeding rate and close relationship to several major foods, feed …

Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice

XY Zhai, ZJ Chen, J Liu, N Zhang… - Journal of Agricultural …, 2022 - ACS Publications
Agricultural chemical residues in farmland and crops is one of the serious public issues that
constantly threatens crop production, food security, and human health. Understanding their …

Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels

Y Zhang, D Zou, T Zhu, T Xu, M Chen… - Nucleic acids …, 2022 - academic.oup.com
Transcriptomic profiling is critical to uncovering functional elements from transcriptional and
post-transcriptional aspects. Here, we present Gene Expression Nebulas (GEN, https://ngdc …

Manually annotated gene prediction of the CN14 peach genome

H Zhang, B Feng, C Wang, X Lian, X Wang, X Zheng… - Scientia …, 2023 - Elsevier
Peach (Prunus persica) is a fruit tree in the Rosaceae family and serves as an ideal plant for
research on important agronomic characters due to its modest genome size and moderate …