Antigen presentation in cancer: insights into tumour immunogenicity and immune evasion

S Jhunjhunwala, C Hammer, L Delamarre - Nature Reviews Cancer, 2021 - nature.com
Immune checkpoint blockade, which blocks inhibitory signals of T cell activation, has shown
tremendous success in treating cancer, although success still remains limited to a fraction of …

A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Y Chu, Y Zhang, Q Wang, L Zhang, X Wang… - Nature Machine …, 2022 - nature.com
Human leukocyte antigen (HLA) can recognize and bind foreign peptides to present them to
specialized immune cells, then initiate an immune response. Computational prediction of the …

[HTML][HTML] NK cell education: Physiological and pathological influences

P Rascle, G Woolley, S Jost, C Manickam… - Frontiers in …, 2023 - frontiersin.org
Natural killer (NK) cells represent a critical defense against viral infections and cancers. NK
cells require integration of activating and inhibitory NK cell receptors to detect target cells …

Alterations in the HLA-B* 57: 01 immunopeptidome by flucloxacillin and immunogenicity of drug-haptenated peptides

M Puig, S Ananthula, R Venna… - Frontiers in …, 2021 - frontiersin.org
Neoantigen formation due to the interaction of drug molecules with human leukocyte antigen
(HLA)-peptide complexes can lead to severe hypersensitivity reactions. Flucloxacillin (FLX) …

[PDF][PDF] Precision neoantigen discovery using large-scale immunopeptidomes and composite modeling of MHC peptide presentation

RM Pyke, D Mellacheruvu, S Dea, CW Abbott… - Molecular & Cellular …, 2021 - ASBMB
Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite
Modeling of MHC Peptide Presentation Page 1 Precision Neoantigen Discovery Using …

Immunopeptidomic analysis reveals that deamidated HLA-bound peptides arise predominantly from deglycosylated precursors

S Mei, R Ayala, SH Ramarathinam, PT Illing… - Molecular & Cellular …, 2020 - ASBMB
The presentation of post-translationally modified (PTM) peptides by cell surface HLA
molecules has the potential to increase the diversity of targets for surveilling T cells …

Identification of flucloxacillin-haptenated HLA-B* 57: 01 ligands: evidence of antigen processing and presentation

JC Waddington, X Meng, PT Illing, A Tailor… - Toxicological …, 2020 - academic.oup.com
Flucloxacillin is a β-lactam antibiotic associated with a high incidence of drug-induced liver
reactions. Although expression of human leukocyte antigen (HLA)-B* 57: 01 increases …

[HTML][HTML] Structural aspects of chemical modifications in the MHC-restricted immunopeptidome; Implications for immune recognition

T Sandalova, BM Sala, A Achour - Frontiers in Chemistry, 2022 - frontiersin.org
Significant advances in mass-spectroscopy (MS) have made it possible to investigate the
cellular immunopeptidome, a large collection of MHC-associated epitopes presented on the …

T cell epitope discovery in the context of distinct and unique indigenous HLA profiles

L Hensen, PT Illing, LC Rowntree, J Davies… - Frontiers in …, 2022 - frontiersin.org
CD8+ T cells are a pivotal part of the immune response to viruses, playing a key role in
disease outcome and providing long-lasting immunity to conserved pathogen epitopes …

Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules

S Mei, F Li, D Xiang, R Ayala, P Faridi… - Briefings in …, 2021 - academic.oup.com
Neopeptide-based immunotherapy has been recognised as a promising approach for the
treatment of cancers. For neopeptides to be recognised by CD8+ T cells and induce an …