Unbiased spatial proteomics with single-cell resolution in tissues

A Mund, AD Brunner, M Mann - Molecular Cell, 2022 - cell.com
Mass spectrometry (MS)-based proteomics has become a powerful technology to quantify
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …

Mass spectrometry using electrospray ionization

GRD Prabhu, ER Williams, M Wilm… - Nature Reviews Methods …, 2023 - nature.com
Applying a high voltage to a liquid passing through a capillary disintegrates the liquid
meniscus to generate a fine spray of charged droplets. As the droplets evaporate, polar …

Mass-spectrometry-based draft of the Arabidopsis proteome

J Mergner, M Frejno, M List, M Papacek, X Chen… - Nature, 2020 - nature.com
Plants are essential for life and are extremely diverse organisms with unique molecular
capabilities. Here we present a quantitative atlas of the transcriptomes, proteomes and …

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

D Wang, B Eraslan, T Wieland, B Hallström… - Molecular systems …, 2019 - embopress.org
Abstract Genome‐, transcriptome‐and proteome‐wide measurements provide insights into
how biological systems are regulated. However, fundamental aspects relating to which …

The target landscape of clinical kinase drugs

S Klaeger, S Heinzlmeir, M Wilhelm, H Polzer, B Vick… - Science, 2017 - science.org
INTRODUCTION Molecularly targeted drugs such as imatinib and crizotinib have
revolutionized the treatment of certain blood and lung cancers because of their remarkable …

Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics

M Wilhelm, DP Zolg, M Graber, S Gessulat… - Nature …, 2021 - nature.com
Characterizing the human leukocyte antigen (HLA) bound ligandome by mass spectrometry
(MS) holds great promise for developing vaccines and drugs for immune-oncology. Still, the …

Extracellular nanovesicles for packaging of CRISPR-Cas9 protein and sgRNA to induce therapeutic exon skipping

P Gee, MSY Lung, Y Okuzaki, N Sasakawa… - Nature …, 2020 - nature.com
Prolonged expression of the CRISPR-Cas9 nuclease and gRNA from viral vectors may
cause off-target mutagenesis and immunogenicity. Thus, a transient delivery system is …

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS

Y Bian, R Zheng, FP Bayer, C Wong, YC Chang… - Nature …, 2020 - nature.com
Nano-flow liquid chromatography tandem mass spectrometry (nano-flow LC–MS/MS) is the
mainstay in proteome research because of its excellent sensitivity but often comes at the …

Turbulence activates platelet biogenesis to enable clinical scale ex vivo production

Y Ito, S Nakamura, N Sugimoto, T Shigemori, Y Kato… - Cell, 2018 - cell.com
The ex vivo generation of platelets from human-induced pluripotent cells (hiPSCs) is
expected to compensate donor-dependent transfusion systems. However, manufacturing the …

Meltome atlas—thermal proteome stability across the tree of life

A Jarzab, N Kurzawa, T Hopf, M Moerch, J Zecha… - Nature …, 2020 - nature.com
We have used a mass spectrometry-based proteomic approach to compile an atlas of the
thermal stability of 48,000 proteins across 13 species ranging from archaea to humans and …