[HTML][HTML] Detection of alternative DNA structures and its implications for human disease

G Matos-Rodrigues, JA Hisey, A Nussenzweig… - Molecular Cell, 2023 - cell.com
Around 3% of the genome consists of simple DNA repeats that are prone to forming
alternative (non-B) DNA structures, such as hairpins, cruciforms, triplexes (H-DNA), four …

Update on R-loops in genomic integrity: Formation, functions, and implications for human diseases

M Zhu, X Wang, H Zhao, Z Wang - Genes & Diseases, 2024 - Elsevier
R-loops, three-strand nucleic acid structures, have emerged as crucial players in various
physiological processes, including the regulation of gene expression, DNA replication, and …

[PDF][PDF] PCAF promotes R-loop resolution via histone acetylation

SY Lee, SH Lee, NH Choi, JY Kim… - Nucleic Acids …, 2024 - academic.oup.com
R-loops cause genome instability, disrupting normal cellular functions. Histone acetylation,
particularly by p300/CBP-associated factor (PCAF), is essential for maintaining genome …

Immunoprecipitation of RNA–DNA hybrid interacting proteins in Trypanosoma brucei reveals conserved and novel activities, including in the control of surface …

MJ Girasol, EM Briggs, CA Marques… - Nucleic Acids …, 2023 - academic.oup.com
RNA–DNA hybrids are epigenetic features of genomes that provide a diverse and growing
range of activities. Understanding of these functions has been informed by characterising …

[HTML][HTML] p53 mediated regulation of LINE1 retrotransposon derived R-loops

P Paul, A Kumar, AS Parida, AK De, G Bhadke… - Journal of Biological …, 2025 - Elsevier
Abstract Long Interspersed Nuclear Element 1 (LINE1/L1) retrotransposons, which comprise
17% of the human genome, typically remain inactive in healthy somatic cells but are …

Approaches for Mapping and Analysis of R‐loops

P Mukhopadhyay, H Miller, A Stoja… - Current …, 2024 - Wiley Online Library
R‐loops are nucleic acid structures composed of a DNA: RNA hybrid with a displaced non‐
template single‐stranded DNA. Current approaches to identify and map R‐loop formation …

Unraveling the complexity: Advanced methods in analyzing DNA, RNA, and protein interactions

ML Peixoto, E Madan - Advances in cancer research, 2024 - pubmed.ncbi.nlm.nih.gov
Exploring the intricate interplay within and between nucleic acids, as well as their
interactions with proteins, holds pivotal significance in unraveling the molecular complexities …

p53 restores the silencing of activated L1 Transposons

P Paul, A Kumar, AK De, AS Parida, S Khatua… - bioRxiv, 2024 - biorxiv.org
Abstract LINE1/L1 transposons, comprising around 20% of the human genome, typically
remain quiescent in healthy somatic cells but become activated in various cancer types. Our …

[引用][C] Investigating factors associated with the Alternative Lengthening of Telomeres

AW Garvie - 2022 - bridges.monash.edu
This thesis examines key factors activating the Alternative Lengthening of Telomeres (ALT)
Pathway and promoting cellular immortality in paediatric brain cancers. It also investigates …