Identification, discrimination and heterogeneity of fibroblasts

U Lendahl, L Muhl, C Betsholtz - Nature communications, 2022 - nature.com
Fibroblasts, the principal cell type of connective tissue, secrete extracellular matrix
components during tissue development, homeostasis, repair and disease. Despite this …

Testicular germ cell tumor: a comprehensive review

A Batool, N Karimi, XN Wu, SR Chen, YX Liu - Cellular and Molecular Life …, 2019 - Springer
Testicular tumors are the most common tumors in adolescent and young men and germ cell
tumors (TGCTs) account for most of all testicular cancers. Increasing incidence of TGCTs …

The adult human testis transcriptional cell atlas

J Guo, EJ Grow, H Mlcochova, GJ Maher, C Lindskog… - Cell research, 2018 - nature.com
Human adult spermatogenesis balances spermatogonial stem cell (SSC) self-renewal and
differentiation, alongside complex germ cell-niche interactions, to ensure long-term fertility …

Context-dependent functional compensation between Ythdf m6A reader proteins

L Lasman, V Krupalnik, S Viukov, N Mor… - Genes & …, 2020 - genesdev.cshlp.org
Abstract The N6-methyladenosine (m 6 A) modification is the most prevalent post-
transcriptional mRNA modification, regulating mRNA decay and splicing. It plays a major …

The molecular evolution of spermatogenesis across mammals

F Murat, N Mbengue, SB Winge, T Trefzer, E Leushkin… - Nature, 2023 - nature.com
The testis produces gametes through spermatogenesis and evolves rapidly at both the
morphological and molecular level in mammals,,,,–, probably owing to the evolutionary …

[HTML][HTML] Single-cell RNA sequencing of human, macaque, and mouse testes uncovers conserved and divergent features of mammalian spermatogenesis

AN Shami, X Zheng, SK Munyoki, Q Ma, GL Manske… - Developmental cell, 2020 - cell.com
Spermatogenesis is a highly regulated process that produces sperm to transmit genetic
information to the next generation. Although extensively studied in mice, our current …

Cell type-specific inference of differential expression in spatial transcriptomics

DM Cable, E Murray, V Shanmugam, S Zhang… - Nature …, 2022 - nature.com
A central problem in spatial transcriptomics is detecting differentially expressed (DE) genes
within cell types across tissue context. Challenges to learning DE include changing cell type …

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

C Ernst, N Eling, CP Martinez-Jimenez… - Nature …, 2019 - nature.com
Male gametes are generated through a specialised differentiation pathway involving a
series of developmental transitions that are poorly characterised at the molecular level …

Cell-fate transition and determination analysis of mouse male germ cells throughout development

J Zhao, P Lu, C Wan, Y Huang, M Cui, X Yang… - Nature …, 2021 - nature.com
Mammalian male germ cell development is a stepwise cell-fate transition process; however,
the full-term developmental profile of male germ cells remains undefined. Here, by …

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

R Shen, L Liu, Z Wu, Y Zhang, Z Yuan, J Guo… - Nature …, 2022 - nature.com
Spatially resolved transcriptomics provides the opportunity to investigate the gene
expression profiles and the spatial context of cells in naive state, but at low transcript …