The NEL family of bacterial E3 ubiquitin ligases

A Bullones-Bolaños, J Bernal-Bayard… - International Journal of …, 2022 - mdpi.com
Some pathogenic or symbiotic Gram-negative bacteria can manipulate the ubiquitination
system of the eukaryotic host cell using a variety of strategies. Members of the genera …

Desmosomal protein degradation as an underlying cause of arrhythmogenic cardiomyopathy

H Tsui, SJ van Kampen, SJ Han, V Meraviglia… - Science translational …, 2023 - science.org
Arrhythmogenic cardiomyopathy (ACM) is an inherited progressive cardiac disease. Many
patients with ACM harbor mutations in desmosomal genes, predominantly in plakophilin-2 …

The WD40-repeat protein-containing deubiquitinase complex: catalysis, regulation, and potential for therapeutic intervention

MA Villamil, Q Liang, Z Zhuang - Cell biochemistry and biophysics, 2013 - Springer
Ubiquitination has emerged as an essential signaling mechanism in eukaryotes.
Deubiquitinases (DUBs) counteract the activities of the ubiquitination machinery and provide …

hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties

Z Chen, Y Zhou, J Song, Z Zhang - … et Biophysica Acta (BBA)-Proteins and …, 2013 - Elsevier
As one of the most common post-translational modifications, ubiquitination regulates the
quantity and function of a variety of proteins. Experimental and clinical investigations have …

Quantitative analysis of the brain ubiquitylome in Alzheimer's disease

MH Abreha, EB Dammer, L Ping, T Zhang… - …, 2018 - Wiley Online Library
Several neurodegenerative diseases including Alzheimer's Disease (AD) are characterized
by ubiquitin‐positive pathological protein aggregates. Here, an immunoaffinity approach is …

Middle-down mass spectrometry enables characterization of branched ubiquitin chains

EM Valkevich, NA Sanchez, Y Ge, ER Strieter - Biochemistry, 2014 - ACS Publications
Protein ubiquitylation, one of the most prevalent post-translational modifications in
eukaryotes, is involved in regulating nearly every cellular signaling pathway. The vast …

High-throughput profiling of proteome and posttranslational modifications by 16-Plex TMT labeling and mass spectrometry

K Yu, Z Wang, Z Wu, H Tan, A Mishra… - Quantitative Methods in …, 2021 - Springer
Mass spectrometry (MS)-based proteomic profiling of whole proteome and protein
posttranslational modifications (PTMs) is a powerful technology to measure the dynamics of …

BAG3 induction is required to mitigate proteotoxicity via selective autophagy following inhibition of constitutive protein degradation pathways

F Rapino, M Jung, S Fulda - Oncogene, 2014 - nature.com
Simultaneous inhibition of the two major constitutive protein quality control (PQC) pathways,
that is, the ubiquitin-proteasome system (UPS) and the aggresome-autophagy system, has …

Advances in characterizing ubiquitylation sites by mass spectrometry

KB Sylvestersen, C Young, ML Nielsen - Current opinion in chemical …, 2013 - Elsevier
The attachment of one or more ubiquitin moieties to proteins plays a central regulatory
mechanism in eukaryotic cells. Protein ubiquitylation regulates numerous cellular …

The application of targeted mass spectrometry‐based strategies to the detection and localization of post‐translational modifications

N Chicooree, RD Unwin… - Mass spectrometry …, 2015 - Wiley Online Library
This review describes some of the more interesting and imaginative ways in which mass
spectrometry has been utilized to study a number of important post‐translational …