Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

R Lücking, SD Leavitt, DL Hawksworth - Fungal Diversity, 2021 - Springer
Lichens are symbiotic associations resulting from interactions among fungi (primary and
secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts) …

Acknowledging more biodiversity without more species

C Dufresnes, N Poyarkov… - Proceedings of the …, 2023 - National Acad Sciences
Delimiting and naming biodiversity is a vital step toward wildlife conservation and research.
However, species delimitation must be consistent across biota so that the limited resources …

The use of bioacoustics in anuran taxonomy: theory, terminology, methods and recommendations for best practice

J Koehler, M Jansen, A Rodriguez, PJR Kok, LF Toledo… - Zootaxa, 2017 - biotaxa.org
Vocalizations of anuran amphibians have received much attention in studies of behavioral
ecology and physiology, but also provide informative characters for identifying and …

Investigating species boundaries in Colletotrichum

CS Bhunjun, C Phukhamsakda, RS Jayawardena… - Fungal Diversity, 2021 - Springer
Colletotrichum is one of the most important plant pathogenic genera that is responsible for
numerous diseases which can have a profound impact on the agricultural sector. Species …

Incorporating the speciation process into species delimitation

J Sukumaran, MT Holder… - PLoS Computational …, 2021 - journals.plos.org
The “multispecies” coalescent (MSC) model that underlies many genomic species-
delimitation approaches is problematic because it does not distinguish between genetic …

DNA barcode‐based delineation of putative species: efficient start for taxonomic workflows

M Kekkonen, PDN Hebert - Molecular ecology resources, 2014 - Wiley Online Library
The analysis of DNA barcode sequences with varying techniques for cluster recognition
provides an efficient approach for recognizing putative species (operational taxonomic units …

The hitchhiker's guide to single‐locus species delimitation

S Dellicour, JF Flot - Molecular Ecology Resources, 2018 - Wiley Online Library
Molecular approaches to species delimitation are increasingly used to ascertain the number
of species in a sample prior to taxonomic, ecological or physiological studies. Although …

DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent

G Jones, Z Aydin, B Oxelman - Bioinformatics, 2015 - academic.oup.com
Motivation: The multispecies coalescent model provides a formal framework for the
assignment of individual organisms to species, where the species are modeled as the …

iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists

M Vences, A Miralles, S Brouillet, J Ducasse… - BioRxiv, 2021 - biorxiv.org
While powerful and user-friendly software suites exist for phylogenetics, and an impressive
cybertaxomic infrastructure of online species databases has been set up in the past two …

Rarity and incomplete sampling in DNA-based species delimitation

D Ahrens, T Fujisawa, HJ Krammer, J Eberle… - Systematic …, 2016 - academic.oup.com
DNA-based species delimitation may be compromised by limited sampling effort and
species rarity, including “singleton” representatives of species, which hampers estimates of …