[HTML][HTML] Animal and translational models of SARS-CoV-2 infection and COVID-19

MD Johansen, A Irving, X Montagutelli, MD Tate… - Mucosal …, 2020 - nature.com
COVID-19 is causing a major once-in-a-century global pandemic. The scientific and clinical
community is in a race to define and develop effective preventions and treatments. The …

[PDF][PDF] The molecular basis of drug addiction: linking epigenetic to synaptic and circuit mechanisms

EJ Nestler, C Lüscher - Neuron, 2019 - cell.com
Addiction is a disease in which, after a period of recreational use, a subset of individuals
develops compulsive use that does not stop even in light of major negative consequences …

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

M Hagemann-Jensen, C Ziegenhain, P Chen… - Nature …, 2020 - nature.com
Large-scale sequencing of RNA from individual cells can reveal patterns of gene, isoform
and allelic expression across cell types and states. However, current short-read single-cell …

Single-cell mRNA quantification and differential analysis with Census

X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell - Nature methods, 2017 - nature.com
Single-cell gene expression studies promise to reveal rare cell types and cryptic states, but
the high variability of single-cell RNA-seq measurements frustrates efforts to assay …

[PDF][PDF] Epithelial NOTCH signaling rewires the tumor microenvironment of colorectal cancer to drive poor-prognosis subtypes and metastasis

R Jackstadt, SR van Hooff, JD Leach, X Cortes-Lavaud… - Cancer cell, 2019 - cell.com
The metastatic process of colorectal cancer (CRC) is not fully understood and effective
therapies are lacking. We show that activation of NOTCH1 signaling in the murine intestinal …

A universal SNP and small-indel variant caller using deep neural networks

R Poplin, PC Chang, D Alexander, S Schwartz… - Nature …, 2018 - nature.com
Despite rapid advances in sequencing technologies, accurately calling genetic variants
present in an individual genome from billions of short, errorful sequence reads remains …

Local regulation of gene expression by lncRNA promoters, transcription and splicing

JM Engreitz, JE Haines, EM Perez, G Munson, J Chen… - Nature, 2016 - nature.com
Mammalian genomes are pervasively transcribed, to produce thousands of long non-coding
RNAs (lncRNAs),. A few of these lncRNAs have been shown to recruit regulatory complexes …

Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity

S Shalapour, XJ Lin, IN Bastian, J Brain, AD Burt… - Nature, 2017 - nature.com
The role of adaptive immunity in early cancer development is controversial. Here we show
that chronic inflammation and fibrosis in humans and mice with non-alcoholic fatty liver …

Ensembl 2017

BL Aken, P Achuthan, W Akanni… - Nucleic acids …, 2017 - academic.oup.com
Abstract Ensembl (www. ensembl. org) is a database and genome browser for enabling
research on vertebrate genomes. We import, analyse, curate and integrate a diverse …

[HTML][HTML] Whole chromosome loss and genomic instability in mouse embryos after CRISPR-Cas9 genome editing

S Papathanasiou, S Markoulaki, LJ Blaine… - Nature …, 2021 - nature.com
Karyotype alterations have emerged as on-target complications from CRISPR-Cas9 genome
editing. However, the events that lead to these karyotypic changes in embryos after Cas9 …