Roles of transposable elements in the regulation of mammalian transcription

R Fueyo, J Judd, C Feschotte, J Wysocka - Nature reviews Molecular …, 2022 - nature.com
Transposable elements (TEs) comprise about half of the mammalian genome. TEs often
contain sequences capable of recruiting the host transcription machinery, which they use to …

Writing, erasing and reading histone lysine methylations

K Hyun, J Jeon, K Park, J Kim - Experimental & molecular medicine, 2017 - nature.com
Histone modifications are key epigenetic regulatory features that have important roles in
many cellular events. Lysine methylations mark various sites on the tail and globular …

RNA polymerase II speed: a key player in controlling and adapting transcriptome composition

L Muniz, E Nicolas, D Trouche - The EMBO journal, 2021 - embopress.org
Abstract RNA polymerase II (RNA Pol II) speed or elongation rate, ie, the number of
nucleotides synthesized per unit of time, is a major determinant of transcriptome …

Nuclear speckles: molecular organization, biological function and role in disease

L Galganski, MO Urbanek… - Nucleic acids …, 2017 - academic.oup.com
The nucleoplasm is not homogenous; it consists of many types of nuclear bodies, also
known as nuclear domains or nuclear subcompartments. These self-organizing structures …

Getting up to speed with transcription elongation by RNA polymerase II

I Jonkers, JT Lis - Nature reviews Molecular cell biology, 2015 - nature.com
Recent advances in sequencing techniques that measure nascent transcripts and that
reveal the positioning of RNA polymerase II (Pol II) have shown that the pausing of Pol II in …

The alternative role of DNA methylation in splicing regulation

GL Maor, A Yearim, G Ast - Trends in Genetics, 2015 - cell.com
Although DNA methylation was originally thought to only affect transcription, emerging
evidence shows that it also regulates alternative splicing. Exons, and especially splice sites …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators

N Liu, CH Lee, T Swigut, E Grow, B Gu, MC Bassik… - Nature, 2018 - nature.com
Transposable elements, also known as transposons, are now recognized not only as
parasitic DNA, the spread of which in the genome must be controlled by the host, but also as …

Histone lysine methylation dynamics: establishment, regulation, and biological impact

JC Black, C Van Rechem, JR Whetstine - Molecular cell, 2012 - cell.com
Histone lysine methylation has emerged as a critical player in the regulation of gene
expression, cell cycle, genome stability, and nuclear architecture. Over the past decade, a …

Alternative splicing: a pivotal step between eukaryotic transcription and translation

AR Kornblihtt, IE Schor, M Alló, G Dujardin… - … reviews Molecular cell …, 2013 - nature.com
Alternative splicing was discovered simultaneously with splicing over three decades ago.
Since then, an enormous body of evidence has demonstrated the prevalence of alternative …