[HTML][HTML] Knowledge discovery and interactive data mining in bioinformatics-state-of-the-art, future challenges and research directions
Background The life sciences, biomedicine and health care are increasingly turning into a
data intensive science [2–4]. Particularly in bioinformatics and computational biology we …
data intensive science [2–4]. Particularly in bioinformatics and computational biology we …
The topology toolkit
This system paper presents the Topology ToolKit (TTK), a software platform designed for the
topological analysis of scalar data in scientific visualization. While topological data analysis …
topological analysis of scalar data in scientific visualization. While topological data analysis …
Continuous hierarchical representations with poincaré variational auto-encoders
Abstract The Variational Auto-Encoder (VAE) is a popular method for learning a generative
model and embeddings of the data. Many real datasets are hierarchically structured …
model and embeddings of the data. Many real datasets are hierarchically structured …
An overview of the topology toolkit
This software paper gives an overview of the features supported by the Topology ToolKit
(TTK), which is an open-source library for topological data analysis (TDA). TTK implements …
(TTK), which is an open-source library for topological data analysis (TDA). TTK implements …
A survey of topology‐based methods in visualization
This paper presents the state of the art in the area of topology‐based visualization. It
describes the process and results of an extensive annotation for generating a definition and …
describes the process and results of an extensive annotation for generating a definition and …
Task-based augmented merge trees with fibonacci heaps
This paper presents a new algorithm for the fast, shared memory multi-core computation of
augmented merge trees on triangulations. In contrast to most existing parallel algorithms …
augmented merge trees on triangulations. In contrast to most existing parallel algorithms …
Lifted Wasserstein matcher for fast and robust topology tracking
M Soler, M Plainchault, B Conche… - 2018 IEEE 8th …, 2018 - ieeexplore.ieee.org
This paper presents a robust and efficient method for tracking topological features in time-
varying scalar data. Structures are tracked based on the optimal matching between …
varying scalar data. Structures are tracked based on the optimal matching between …
Data polygamy: The many-many relationships among urban spatio-temporal data sets
The increasing ability to collect data from urban environments, coupled with a push towards
openness by governments, has resulted in the availability of numerous spatio-temporal data …
openness by governments, has resulted in the availability of numerous spatio-temporal data …
Using topological analysis to support event-guided exploration in urban data
The explosion in the volume of data about urban environments has opened up opportunities
to inform both policy and administration and thereby help governments improve the lives of …
to inform both policy and administration and thereby help governments improve the lives of …
Topologically controlled lossy compression
M Soler, M Plainchault, B Conche… - 2018 IEEE Pacific …, 2018 - ieeexplore.ieee.org
This paper presents a new algorithm for the lossy compression of scalar data defined on 2D
or 3D regular grids, with topological control. Certain techniques allow users to control the …
or 3D regular grids, with topological control. Certain techniques allow users to control the …