[HTML][HTML] Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence

Y Xu, GH Su, D Ma, Y Xiao, ZM Shao… - Signal Transduction and …, 2021 - nature.com
Immunotherapies play critical roles in cancer treatment. However, given that only a few
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …

[HTML][HTML] Advancing personalized medicine through the application of whole exome sequencing and big data analytics

P Suwinski, CK Ong, MHT Ling, YM Poh… - Frontiers in …, 2019 - frontiersin.org
There is a growing attention toward personalized medicine. This is led by a fundamental
shift from the 'one size fits all'paradigm for treatment of patients with conditions or …

Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes

R Gao, S Bai, YC Henderson, Y Lin, A Schalck… - Nature …, 2021 - nature.com
Single-cell transcriptomic analysis is widely used to study human tumors. However, it
remains challenging to distinguish normal cell types in the tumor microenvironment from …

[HTML][HTML] Chemoresistance evolution in triple-negative breast cancer delineated by single-cell sequencing

C Kim, R Gao, E Sei, R Brandt, J Hartman, T Hatschek… - Cell, 2018 - cell.com
Triple-negative breast cancer (TNBC) is an aggressive subtype that frequently develops
resistance to chemotherapy. An unresolved question is whether resistance is caused by the …

FGFR2 Extracellular Domain In-Frame Deletions Are Therapeutically Targetable Genomic Alterations That Function as Oncogenic Drivers in Cholangiocarcinoma

JM Cleary, S Raghavan, Q Wu, YY Li, LF Spurr… - Cancer discovery, 2021 - AACR
We conducted next-generation DNA sequencing on 335 biliary tract cancers and
characterized the genomic landscape by anatomic site within the biliary tree. In addition to …

muTarget: a platform linking gene expression changes and mutation status in solid tumors

Á Nagy, B Győrffy - International journal of cancer, 2021 - Wiley Online Library
Large oncology repositories have paired genomic and transcriptomic data for all patients.
We used these data to perform two independent analyses: to identify gene expression …

[HTML][HTML] Longitudinal single-cell profiling reveals molecular heterogeneity and tumor-immune evolution in refractory mantle cell lymphoma

S Zhang, VC Jiang, G Han, D Hao, J Lian, Y Liu… - Nature …, 2021 - nature.com
The mechanisms driving therapeutic resistance and poor outcomes of mantle cell lymphoma
(MCL) are incompletely understood. We characterize the cellular and molecular …

Aberrant Cholesterol Metabolism and Wnt/β‐Catenin Signaling Coalesce via Frizzled5 in Supporting Cancer Growth

S Zheng, J Lin, Z Pang, H Zhang, Y Wang… - Advanced …, 2022 - Wiley Online Library
Abstract Frizzled (Fzd) proteins are Wnt receptors and play essential roles in development,
homeostasis, and oncogenesis. How Wnt/Fzd signaling is coupled to physiological …

[HTML][HTML] Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma

PC Lee, S Klaeger, PM Le, K Korthauer… - The Journal of …, 2022 - Am Soc Clin Investig
Cancers avoid immune surveillance through an array of mechanisms, including perturbation
of HLA class I antigen presentation. Merkel cell carcinoma (MCC) is an aggressive, HLA-I …

[HTML][HTML] Comparison of three variant callers for human whole genome sequencing

A Supernat, OV Vidarsson, VM Steen, T Stokowy - Scientific reports, 2018 - nature.com
Testing of patients with genetics-related disorders is in progress of shifting from single gene
assays to gene panel sequencing, whole-exome sequencing (WES) and whole-genome …