Cleavable Cross-Linkers and Mass Spectrometry for the Ultimate Task of Profiling Protein–Protein Interaction Networks in Vivo

M Matzinger, K Mechtler - Journal of proteome research, 2020 - ACS Publications
Cross-linking mass spectrometry (XL-MS) has matured into a potent tool to identify protein–
protein interactions or to uncover protein structures in living cells, tissues, or organelles. The …

New advances in cross-linking mass spectrometry toward structural systems biology

C Yu, L Huang - Current opinion in chemical biology, 2023 - Elsevier
Elucidating protein–protein interaction (PPI) networks and their structural features within
cells is central to understanding fundamental biology and associations of cell phenotypes …

Towards a structurally resolved human protein interaction network

DF Burke, P Bryant, I Barrio-Hernandez… - Nature Structural & …, 2023 - nature.com
Cellular functions are governed by molecular machines that assemble through protein-
protein interactions. Their atomic details are critical to studying their molecular mechanisms …

Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

A Wheat, C Yu, X Wang, AM Burke… - Proceedings of the …, 2021 - National Acad Sciences
Defining protein–protein interactions (PPIs) in their native environment is crucial to
understanding protein structure and function. Cross-linking–mass spectrometry (XL-MS) has …

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

S Lenz, LR Sinn, FJ O'Reilly, L Fischer… - Nature …, 2021 - nature.com
Protein-protein interactions govern most cellular pathways and processes, and multiple
technologies have emerged to systematically map them. Assessing the error of interaction …

[HTML][HTML] Anatomy of a crosslinker

A Belsom, J Rappsilber - Current opinion in chemical biology, 2021 - Elsevier
Crosslinking mass spectrometry has become a core technology in structural biology and is
expanding its reach towards systems biology. Its appeal lies in a rapid workflow, high …

Accelerating the field of epigenetic histone modification through mass spectrometry–based approaches

C Lu, M Coradin, EG Porter, BA Garcia - Molecular & Cellular Proteomics, 2021 - ASBMB
Histone post-translational modifications (PTMs) are one of the main mechanisms of
epigenetic regulation. Dysregulation of histone PTMs leads to many human diseases, such …

Toward increased reliability, transparency, and accessibility in cross-linking mass spectrometry

A Leitner, AMJJ Bonvin, CH Borchers, RJ Chalkley… - Structure, 2020 - cell.com
Cross-linking mass spectrometry (MS) has substantially matured as a method over the past
2 decades through parallel development in multiple labs, demonstrating its applicability to …

Two-dimensional fractionation method for proteome-wide cross-linking mass spectrometry analysis

F Jiao, C Yu, A Wheat, X Wang… - Analytical …, 2022 - ACS Publications
Cross-linking mass spectrometry (XL-MS) is an emergent technology for studying protein–
protein interactions (PPIs) and elucidating architectures of protein complexes. The …

[HTML][HTML] Inferring protein-protein interaction networks from mass spectrometry-based proteomic approaches: a mini-review

K Yugandhar, S Gupta, H Yu - Computational and structural biotechnology …, 2019 - Elsevier
Studying protein-protein interaction networks provide key evidence for the underlying
molecular mechanisms. Mass spectrometry-based proteomic approaches have been …