[HTML][HTML] Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization

F Hu, AA Chen, H Horng, V Bashyam, C Davatzikos… - NeuroImage, 2023 - Elsevier
Magnetic resonance imaging and computed tomography from multiple batches (eg sites,
scanners, datasets, etc.) are increasingly used alongside complex downstream analyses to …

[HTML][HTML] A guide to the measurement and interpretation of fMRI test-retest reliability

S Noble, D Scheinost, RT Constable - Current opinion in behavioral …, 2021 - Elsevier
Highlights•Context is needed to appreciate recent reports of poor univariate fMRI
reliability.•We provide a guide to measuring and interpreting fMRI test-retest reliability via …

Living on the edge: network neuroscience beyond nodes

RF Betzel, J Faskowitz, O Sporns - Trends in cognitive sciences, 2023 - cell.com
Network neuroscience has emphasized the connectional properties of neural elements–
cells, populations, and regions. This has come at the expense of the anatomical and …

[HTML][HTML] Beyond fingerprinting: Choosing predictive connectomes over reliable connectomes

ES Finn, MD Rosenberg - NeuroImage, 2021 - Elsevier
Recent years have seen a surge of research on variability in functional brain connectivity
within and between individuals, with encouraging progress toward understanding the …

Moving beyond processing and analysis-related variation in neuroscience

X Li, NB Esper, L Ai, S Giavasis, H Jin, E Feczko, T Xu… - BioRxiv, 2021 - biorxiv.org
When fields lack consensus standards and ground truths for their analytic methods,
reproducibility can be more of an ideal than a reality. Such has been the case for functional …

ReX: an integrative tool for quantifying and optimizing measurement reliability for the study of individual differences

T Xu, G Kiar, JW Cho, EW Bridgeford, A Nikolaidis… - Nature …, 2023 - nature.com
Characterizing multifaceted individual differences in brain function using neuroimaging is
central to biomarker discovery in neuroscience. We provide an integrative toolbox …

Age‐related change in task‐evoked amygdala—prefrontal circuitry: A multiverse approach with an accelerated longitudinal cohort aged 4–22 years

PA Bloom, M VanTieghem… - Human Brain …, 2022 - Wiley Online Library
The amygdala and its connections with medial prefrontal cortex (mPFC) play central roles in
the development of emotional processes. While several studies have suggested that this …

Subject identification using edge-centric functional connectivity

Y Jo, J Faskowitz, FZ Esfahlani, O Sporns, RF Betzel - NeuroImage, 2021 - Elsevier
Group-level studies do not capture individual differences in network organization, an
important prerequisite for understanding neural substrates shaping behavior and for …

[HTML][HTML] Toward a connectivity gradient-based framework for reproducible biomarker discovery

SJ Hong, T Xu, A Nikolaidis, J Smallwood… - NeuroImage, 2020 - Elsevier
Despite myriad demonstrations of feasibility, the high dimensionality of fMRI data remains a
critical barrier to its utility for reproducible biomarker discovery. Recent efforts to address this …

Neuromodulatory effects and reproducibility of the most widely used repetitive transcranial magnetic stimulation protocols

J Magnuson, MA Ozdemir, E Mathieson, S Kirkman… - Plos one, 2023 - journals.plos.org
Background Repetitive transcranial magnetic stimulation (rTMS) is widely used in both
research and clinical settings to modulate human brain function and behavior through the …