Methods to detect and characterize metal ion binding sites in RNA

MC Erat, RKO Sigel - 2011 - books.rsc.org
Metal ions are inextricably associated with RNAs of any size and control their folding and
activity to a large part. In order to understand RNA mechanisms, also the positioning …

Metal ions: supporting actors in the playbook of small ribozymes

AE Johnson-Buck, SE McDowell, NG Walter - 2011 - books.rsc.org
Since the 1980s, several small RNA motifs capable of chemical catalysis have been
discovered. These small ribozymes, composed of between approximately 40 and 200 …

Selection of a metal ligand modified DNAzyme for detecting Ni2+

W Ren, PJJ Huang, D de Rochambeau… - Biosensors and …, 2020 - Elsevier
Nickel is a highly important metal, and the detection of Ni 2+ using biosensors is a long-
stand analytical challenge. DNA has been widely used for metal detection, although no DNA …

[图书][B] Lead: Its effects on environment and health

K Aoki, M Aschner, JT Cullen, E Farkas, M Filella… - 2017 - books.google.com
Volume 17, entitled Lead: Its Effects on Environment and Health of the series Metal Ions in
Life Sciences centers on the interrelations between biosystems and lead. The book provides …

Characterization of Structure and Metal Ions Specificity of Co2+-Binding RNA Aptamers

J Wrzesinski, J Ciesiolka - Biochemistry, 2005 - ACS Publications
Studies on RNA motifs capable of binding metal ions have largely focused on Mg2+-specific
motifs, therefore information concerning interactions of other metal ions with RNA is still very …

Quadruplex-flanking stem structures modulate the stability and metal ion preferences of RNA mimics of GFP

EA Ageely, ZJ Kartje, KJ Rohilla, CL Barkau… - ACS chemical …, 2016 - ACS Publications
The spinach family of RNA aptamers are RNA mimics of green fluorescent protein (GFP) that
have previously been designed to address the challenges of imaging RNA inside living …

EPR spectroscopic analysis of U7 hammerhead ribozyme dynamics during metal ion induced folding

TE Edwards, ST Sigurdsson - Biochemistry, 2005 - ACS Publications
Electron paramagnetic resonance (EPR) spectroscopy was used to examine changes in
internal structure and dynamics of the hammerhead ribozyme upon metal ion induced …

NMR and XAS reveal an inner-sphere metal binding site in the P4 helix of the metallo-ribozyme ribonuclease P

KS Koutmou, A Casiano-Negroni… - Proceedings of the …, 2010 - National Acad Sciences
Functionally critical metals interact with RNA through complex coordination schemes that
are currently difficult to visualize at the atomic level under solution conditions. Here, we …

Structure and binding of Mg (II) ions and di-metal bridge complexes with biological phosphates and phosphoranes

E Mayaan, K Range, DM York - JBIC Journal of Biological Inorganic …, 2004 - Springer
Divalent Mg 2+ ions often serve as cofactors in enzyme or ribozyme-catalyzed phosphoryl
transfer reactions. In this work, the interaction of Mg 2+ ions and di-metal bridge complexes …

Principles of nucleic acid cleavage by metal ions

A Dallas, AV Vlassov, SA Kazakov - Artificial nucleases, 2004 - Springer
Nucleic acids are responsible for the storage, transmission, and expression of genetic
information in all living organisms. These macromolecules tend to behave as salts in …