A Orsetti, D van Oosten, RG Vasarhelyi… - Biophysical …, 2024 - Springer
Pioneer transcription factors are proteins with a dual function. First, they regulate transcription by binding to nucleosome-free DNA regulatory elements. Second, they bind to …
Promoters play a central role in controlling gene regulation; however, a small set of promoters is used for most genetic construct design in the yeast Saccharomyces cerevisiae …
A Senitzki, J Safieh, V Sharma… - Nucleic Acids …, 2021 - academic.oup.com
Sequence-specific protein-DNA interactions are at the heart of the response of the tumor- suppressor p53 to numerous physiological and stress-related signals. Large variability has …
C Bustamante, S Yan - Quarterly Reviews of Biophysics, 2022 - cambridge.org
The advent of single-molecule force spectroscopy represents the introduction of forces, torques, and displacements as controlled variables in biochemistry. These methods afford …
S Rudnizky, H Khamis, O Malik… - Proceedings of the …, 2019 - National Acad Sciences
The structure of promoter chromatin determines the ability of transcription factors (TFs) to bind to DNA and therefore has a profound effect on the expression levels of genes …
Chromatosomes play a fundamental role in chromatin regulation, but a detailed understanding of their structure is lacking, partially due to their complex dynamics. Using …
T Refael, M Sudman, G Golan, L Pnueli, S Naik… - Cellular and Molecular …, 2024 - Springer
Genome-wide studies have demonstrated regulatory roles for diverse non-coding elements, but their precise and interrelated functions have often remained enigmatic. Addressing the …
M de la Torre, A Pomorski - Frontiers in Chemistry, 2024 - frontiersin.org
Metal ions can perform multiple roles ranging from regulatory to structural and are crucial for cell function. While some metal ions like Na+ are ubiquitously present at high …
L Liang, K Ma, Z Wang, R Janissen, Z Yu - Biophysical Journal, 2021 - cell.com
CpG islands recruit MLL1 via the CXXC domain to modulate chromatin structure and regulate gene expression. The amino acid motif of CXXC also plays a pivotal role in MLL1's …