Highlights•Biomolecular force fields (FFs) have progressed rapidly in the past five years.•Fixed-charge FF accuracy has improved, but challenges remain for complex …
AK Das, L Urban, I Leven… - Journal of chemical …, 2019 - ACS Publications
Given the piecewise approach to modeling intermolecular interactions for force fields, they can be difficult to parametrize since they are fit to data like total energies that only indirectly …
In this perspective, we discuss where and how accounting for electronic many-body polarization affects the accuracy of classical molecular dynamics simulations of …
FY Lin, AD MacKerell - Biomolecular simulations: Methods and protocols, 2019 - Springer
Molecular dynamics (MD) simulations have been widely applied to computer-aided drug design (CADD). While MD has been used in a variety of applications such as free energy …
Molecular simulations of water using classical, molecular mechanic potential energy functions have enjoyed a 50‐year history of development, and much has been learned …
Computational quantum chemistry can be more than just numerical experiments when methods are specifically adapted to investigate chemical concepts. One important example …
In this work, we have developed an anisotropic polarizable model for the AMOEBA force field that is derived from electrostatic fitting on a gas phase water molecule as the primary …
A Dodin, PL Geissler - Journal of Chemical Theory and …, 2023 - ACS Publications
Drude oscillator potentials are a popular and computationally efficient class of polarizable models that represent each polarizable atom as a positively charged Drude core …
MM Ghahremanpour, PJ van Maaren… - Journal of chemical …, 2018 - ACS Publications
Gas-phase electric properties of molecules can be computed routinely using wave function methods or density functional theory (DFT). However, these methods remain …