Standardizing immunophenotyping for the human immunology project

HT Maecker, JP McCoy, R Nussenblatt - Nature Reviews Immunology, 2012 - nature.com
The heterogeneity in the healthy human immune system, and the immunological changes
that portend various diseases, have been only partially described. Their comprehensive …

DNA biosensors and microarrays

A Sassolas, BD Leca-Bouvier, LJ Blum - Chemical reviews, 2008 - ACS Publications
Development of DNA biosensors and DNA microarrays has increased tremendously over
the past few years as demonstrated by the large number of scientific publications in this area …

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+ 4'cell markers

J Muñoz, DE Stange, AG Schepers… - The EMBO …, 2012 - embopress.org
Two types of stem cells are currently defined in small intestinal crypts: cycling crypt base
columnar (CBC) cells and quiescent '+ 4'cells. Here, we combine transcriptomics with …

Direct multiplexed measurement of gene expression with color-coded probe pairs

GK Geiss, RE Bumgarner, B Birditt, T Dahl… - Nature …, 2008 - nature.com
We describe a technology, the NanoString nCounter gene expression system, which
captures and counts individual mRNA transcripts. Advantages over existing platforms …

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

L Shi, G Campbell, WD Jones… - Nature …, 2010 - search.ebscohost.com
Gene expression data from microarrays are being applied to predict preclinical and clinical
endpoints, but the reliability of these predictions has not been established. In the MAQC-II …

Testing significance relative to a fold-change threshold is a TREAT

DJ McCarthy, GK Smyth - Bioinformatics, 2009 - academic.oup.com
Motivation: Statistical methods are used to test for the differential expression of genes in
microarray experiments. The most widely used methods successfully test whether the true …

The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements.

L Shi, LH Reid, WD Jones, R Shippy… - Nature …, 2006 - europepmc.org
Over the last decade, the introduction of microarray technology has had a profound impact
on gene expression research. The publication of studies with dissimilar or altogether …

A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis

R Vanholme, V Storme, B Vanholme, L Sundin… - The Plant …, 2012 - academic.oup.com
Lignin engineering is an attractive strategy to improve lignocellulosic biomass quality for
processing to biofuels and other bio-based products. However, lignin engineering also …

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

PAC 't Hoen, MR Friedländer, J Almlöf… - Nature …, 2013 - nature.com
RNA sequencing is an increasingly popular technology for genome-wide analysis of
transcript sequence and abundance. However, understanding of the sources of technical …

[HTML][HTML] Acidity promotes tumour progression by altering macrophage phenotype in prostate cancer

A El-Kenawi, C Gatenbee, M Robertson-Tessi… - British journal of …, 2019 - nature.com
Background Tumours rapidly ferment glucose to lactic acid even in the presence of oxygen,
and coupling high glycolysis with poor perfusion leads to extracellular acidification. We …