Nucleic acid nanostructures for in vivo applications: The influence of morphology on biological fate

NI Langlois, KY Ma, HA Clark - Applied Physics Reviews, 2023 - pubs.aip.org
The development of programmable biomaterials for use in nanofabrication represents a
major advance for the future of biomedicine and diagnostics. Recent advances in structural …

Autonomous dynamic control of DNA nanostructure self-assembly

LN Green, HKK Subramanian, V Mardanlou, J Kim… - Nature …, 2019 - nature.com
Biological cells routinely reconfigure their shape using dynamic signalling and regulatory
networks that direct self-assembly processes in time and space, through molecular …

Programming cell-free biosensors with DNA strand displacement circuits

JK Jung, CM Archuleta, KK Alam, JB Lucks - Nature chemical biology, 2022 - nature.com
Cell-free biosensors are powerful platforms for monitoring human and environmental health.
Here, we expand their capabilities by interfacing them with toehold-mediated strand …

Dynamic self-assembly of compartmentalized DNA nanotubes

S Agarwal, MA Klocke, PE Pungchai… - Nature communications, 2021 - nature.com
Bottom-up synthetic biology aims to engineer artificial cells capable of responsive behaviors
by using a minimal set of molecular components. An important challenge toward this goal is …

Cell-free synthetic biology platform for engineering synthetic biological circuits and systems

D Jeong, M Klocke, S Agarwal, J Kim, S Choi… - Methods and …, 2019 - mdpi.com
Synthetic biology integrates diverse engineering disciplines to create novel biological
systems for biomedical and technological applications. The substantial growth of the …

Enzyme-driven assembly and disassembly of hybrid DNA–RNA nanotubes

S Agarwal, E Franco - Journal of the American Chemical Society, 2019 - ACS Publications
Living cells have the ability to control the dynamics of responsive assemblies such as the
cytoskeleton by temporally activating and deactivating inert precursors. While DNA …

DNA Tile Self‐Assembly Guided by Base Excision Repair Enzymes

N Farag, G Ercolani, E Del Grosso… - Angewandte Chemie, 2022 - Wiley Online Library
We demonstrate here the use of DNA repair enzymes to control the assembly of DNA‐based
structures. To do so, we employed uracil‐DNA glycosylase (UDG) and formamidopyrimidine …

Programming switchable transcription of topologically constrained DNA

K Jiao, B Zhu, L Guo, H Zhou, F Wang… - Journal of the …, 2020 - ACS Publications
Genomic DNA is compacted via chromatin condensation in mammalian cells, and
transcription of such topologically constrained DNA to messenger RNA is under strict …

Functionalizing DNA Origami by Triplex-Directed Site-Specific Photo-Cross-Linking

S Kalra, A Donnelly, N Singh, D Matthews… - Journal of the …, 2024 - ACS Publications
Here, we present a cross-linking approach to covalently functionalize and stabilize DNA
origami structures in a one-pot reaction. Our strategy involves adding nucleotide sequences …

Allosteric DNAzyme-based DNA logic circuit: Operations and dynamic analysis

X Zheng, J Yang, C Zhou, C Zhang… - Nucleic acids …, 2019 - academic.oup.com
Recently, due to the dual roles of DNA and enzyme, DNAzyme has been widely used in the
field of DNA circuit, which has a wide range of applications in bio-engineered system …