Biological regulation: controlling the system from within

L Bich, M Mossio, K Ruiz-Mirazo, A Moreno - Biology & Philosophy, 2016 - Springer
Biological regulation is what allows an organism to handle the effects of a perturbation,
modulating its own constitutive dynamics in response to particular changes in internal and …

Autocatalytic confusion clarified

W Hordijk - Journal of theoretical biology, 2017 - Elsevier
There is frequent confusion about the terms autocatalytic reaction, autocatalytic cycle, and
autocatalytic set. As the use of the same adjective implies, these three systems do indeed …

Cartography of the multiple formal systems of molecular autopoiesis: from the biology of cognition and enaction to anticipation and active inference

S Rubin - Biosystems, 2023 - Elsevier
A rich literature has grown up over the years that bears with autopoiesis, which tends to
assume that it is a model, a theory, a principle, a definition of life, a property, refers to self …

Beyond planetary-scale feedback self-regulation: Gaia as an autopoietic system

S Rubin, T Veloz, P Maldonado - Biosystems, 2021 - Elsevier
The Gaia hypothesis states that the Earth is an instance of life. However, appraisals of it tend
to focus on the claim that life is a feedback self-regulator that controls Earth's chemistry and …

Towards an analytic framework for system resilience based on reaction networks

T Veloz, P Maldonado, E Bussseniers, A Bassi… - …, 2022 - Wiley Online Library
Reaction network is a promising framework for representing complex systems of diverse and
even interdisciplinary types. In this approach, complex systems appear as self‐maintaining …

The complexity–stability debate, chemical organization theory, and the identification of non-classical structures in ecology

T Veloz - Foundations of Science, 2020 - Springer
We present a novel approach to represent ecological systems using reaction networks, and
show how a particular framework called chemical organization theory (COT) sheds new light …

Cycles and the qualitative evolution of chemical systems

P Kreyssig, G Escuela, B Reynaert, T Veloz, B Ibrahim… - 2012 - journals.plos.org
Cycles are abundant in most kinds of networks, especially in biological ones. Here, we
investigate their role in the evolution of a chemical reaction system from one self-sustaining …

Minimal autocatalytic networks

M Steel, W Hordijk, J Smith - Journal of Theoretical Biology, 2013 - Elsevier
Self-sustaining autocatalytic chemical networks represent a necessary, though not sufficient
condition for the emergence of early living systems. These networks have been formalised …

An investigation into irreducible autocatalytic sets and power law distributed catalysis

W Hordijk, L Hasenclever, J Gao, D Mincheva, J Hein - Natural Computing, 2014 - Springer
RAF theory has been established as a useful and formal framework for studying the
emergence and evolution of autocatalytic sets. Here, we present several new and additional …

The essence of life revisited: how theories can shed light on it

A Cornish-Bowden, ML Cárdenas - Theory in Biosciences, 2022 - Springer
Disagreement over whether life is inevitable when the conditions can support life remains
unresolved, but calculations show that self-organization can arise naturally from purely …