Automatic generation of protein structure cartoons with Pro-origami
Protein topology diagrams are 2D representations of protein structure that are particularly
useful in understanding and analysing complex protein folds. Generating such diagrams …
useful in understanding and analysing complex protein folds. Generating such diagrams …
Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity
Motivation: Aligning and comparing protein structures is important for understanding their
evolutionary and functional relationships. With the rapid growth of protein structure …
evolutionary and functional relationships. With the rapid growth of protein structure …
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background Searching a database of protein structures for matches to a query structure, or
occurrences of a structural motif, is an important task in structural biology and bioinformatics …
occurrences of a structural motif, is an important task in structural biology and bioinformatics …
Multiple graph regularized protein domain ranking
Background Protein domain ranking is a fundamental task in structural biology. Most protein
domain ranking methods rely on the pairwise comparison of protein domains while …
domain ranking methods rely on the pairwise comparison of protein domains while …
ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval
Background The need to retrieve or classify protein molecules using structure or sequence-
based similarity measures underlies a wide range of biomedical applications. Traditional …
based similarity measures underlies a wide range of biomedical applications. Traditional …
Rigid substructure search
D Shirvanyants, AN Alexandrova… - Bioinformatics, 2011 - academic.oup.com
Motivation: Identifying the location of binding sites on proteins is of fundamental importance
for a wide range of applications, including molecular docking, de novo drug design, structure …
for a wide range of applications, including molecular docking, de novo drug design, structure …
Structural class classification of 3d protein structure based on multi-view 2d images
Computing similarity or dissimilarity between protein structures is an important task in
structural biology. A conventional method to compute protein structure dissimilarity requires …
structural biology. A conventional method to compute protein structure dissimilarity requires …
A fast indexing approach for protein structure comparison
L Zhang, J Bailey, AS Konagurthu… - BMC …, 2010 - Springer
Background Protein structure comparison is a fundamental task in structural biology. While
the number of known protein structures has grown rapidly over the last decade, searching a …
the number of known protein structures has grown rapidly over the last decade, searching a …
Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner
FI Gutiérrez, F Rodriguez-Valenzuela, IL Ibarra… - BMC …, 2016 - Springer
Background The total number of known three-dimensional protein structures is rapidly
increasing. Consequently, the need for fast structural search against complete databases …
increasing. Consequently, the need for fast structural search against complete databases …
Derivando Relaciones Evolutivas Entre las Proteínas de Cubierta de Membrana Mediante Comparaciones Estructurales
FIG Espinosa - 2021 - search.proquest.com
Las proteínas de cubierta de membranas (MC) cumplen un rol esencial en el transporte
intracelular, permitiendo el intercambio de materiales entre los compartimientos …
intracelular, permitiendo el intercambio de materiales entre los compartimientos …